Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3457

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,141,772	-		Shewana3_3456	0.52	-0.8
4,142,010	-		Shewana3_3456	0.71	+0.1
4,142,250	-				-0.3
4,142,250	-				-0.7
4,142,258	+				+0.2
4,142,295	+				+0.3
4,142,303	-				-0.4
4,142,303	-				-0.5
4,142,303	-				-0.9
4,142,319	-				+0.0
4,142,642	+				-0.4
4,142,675	+				-1.5
4,142,739	+				-0.1
4,142,761	-				-0.5
4,142,878	+		Shewana3_3457	0.19	-2.7
4,142,878	+		Shewana3_3457	0.19	-0.7
4,142,896	-		Shewana3_3457	0.21	+0.2
4,143,067	+		Shewana3_3457	0.40	-0.4
4,143,192	+		Shewana3_3457	0.53	-0.5
4,143,192	+		Shewana3_3457	0.53	-0.8
4,143,201	-		Shewana3_3457	0.54	+0.1
4,143,231	-		Shewana3_3457	0.57	+0.1
4,143,317	+		Shewana3_3457	0.67	-0.8
4,143,324	+		Shewana3_3457	0.68	-0.2
4,143,324	+		Shewana3_3457	0.68	-1.5
4,143,324	-		Shewana3_3457	0.68	+0.2
4,143,325	-		Shewana3_3457	0.68	-0.2
4,143,342	-		Shewana3_3457	0.69	-0.9
4,143,377	+		Shewana3_3457	0.73	-1.5
4,143,380	+		Shewana3_3457	0.74	-0.5
4,143,382	+		Shewana3_3457	0.74	+1.3
4,143,389	+		Shewana3_3457	0.75	-0.7
4,143,390	-		Shewana3_3457	0.75	+0.0
4,143,394	+		Shewana3_3457	0.75	-0.3
4,143,399	+		Shewana3_3457	0.76	-0.5
4,143,440	+		Shewana3_3457	0.80	-0.4
4,143,456	-		Shewana3_3457	0.82	+0.8
4,143,459	+		Shewana3_3457	0.82	-2.1
4,143,459	+		Shewana3_3457	0.82	-0.3
4,143,466	-		Shewana3_3457	0.83	-0.3
4,143,480	+		Shewana3_3457	0.84	-0.3
4,143,480	+		Shewana3_3457	0.84	-0.4
4,143,481	-		Shewana3_3457	0.84	-2.5
4,143,526	-		Shewana3_3457	0.89	-0.3
4,143,526	-		Shewana3_3457	0.89	+0.2
4,143,593	+				+0.4
4,143,708	+				-0.0
4,143,775	+				+0.5
4,143,783	-				-1.5
4,143,828	-				+2.4
4,143,828	-				+0.3
4,143,840	-				-0.2
4,143,858	-				+2.4
4,143,863	+				-1.5
4,143,863	+				-1.1
4,143,871	-				-0.0
4,143,877	+				-0.9
4,143,880	+				-0.5
4,143,880	+				-1.8
4,143,882	+				-1.3
4,143,897	+				+1.8
4,143,906	-				+0.0
4,143,911	-				-0.9
4,143,936	-				+0.0
4,143,960	+				-0.6
4,143,963	-				-0.5
4,144,070	+		Shewana3_3458	0.11	-2.0
4,144,094	+		Shewana3_3458	0.12	-1.6
4,144,108	-		Shewana3_3458	0.13	+0.0
4,144,347	-		Shewana3_3458	0.23	-0.4
4,144,389	-		Shewana3_3458	0.25	-0.2
4,144,537	+		Shewana3_3458	0.32	-0.3