Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3453

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,135,576	+				+0.4
4,135,581	+				+0.5
4,135,675	-				-0.3
4,135,701	-				-0.1
4,135,720	-				-0.9
4,135,729	+				-0.5
4,135,857	+				-0.4
4,135,875	-				+0.2
4,136,015	+		Shewana3_3452	0.18	-1.2
4,136,110	+		Shewana3_3452	0.43	+0.2
4,136,140	-		Shewana3_3452	0.51	+0.2
4,136,247	+		Shewana3_3452	0.79	-0.6
4,136,247	+		Shewana3_3452	0.79	-0.3
4,136,255	-		Shewana3_3452	0.81	-0.1
4,136,255	-		Shewana3_3452	0.81	-0.0
4,136,332	-				-0.4
4,136,405	+				-1.0
4,136,522	+				-0.2
4,136,668	+		Shewana3_3453	0.14	+2.0
4,136,848	+		Shewana3_3453	0.30	+0.9
4,136,908	+		Shewana3_3453	0.35	-0.2
4,136,916	-		Shewana3_3453	0.36	-0.0
4,136,916	-		Shewana3_3453	0.36	-1.1
4,136,916	-		Shewana3_3453	0.36	+1.0
4,136,918	+		Shewana3_3453	0.36	-1.0
4,137,039	+		Shewana3_3453	0.47	-0.7
4,137,335	-		Shewana3_3453	0.73	-0.7
4,137,385	+		Shewana3_3453	0.77	+0.1
4,137,408	+		Shewana3_3453	0.79	+0.1
4,137,408	+		Shewana3_3453	0.79	-0.1
4,137,423	-		Shewana3_3453	0.81	+1.0
4,137,573	+				-0.2
4,137,612	-				-0.2
4,137,694	-				+2.3
4,137,774	-				+0.0
4,137,781	+				-0.1
4,137,947	-		Shewana3_3454	0.16	-0.4
4,138,030	+		Shewana3_3454	0.21	+0.7
4,138,173	+		Shewana3_3454	0.31	-0.9
4,138,181	-		Shewana3_3454	0.32	-0.3
4,138,199	-		Shewana3_3454	0.33	-0.3
4,138,219	+		Shewana3_3454	0.35	-0.7
4,138,234	+		Shewana3_3454	0.36	-0.5
4,138,234	+		Shewana3_3454	0.36	-0.6
4,138,324	-		Shewana3_3454	0.42	+0.0
4,138,460	-		Shewana3_3454	0.51	+0.2