Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3301 and Shewana3_3302 are separated by 26 nucleotides Shewana3_3302 and Shewana3_3303 are separated by 104 nucleotides Shewana3_3303 and Shewana3_3304 are separated by 674 nucleotides
Shewana3_3301: Shewana3_3301 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,955,522 to 3,960,531
_3301
Shewana3_3302: Shewana3_3302 - ISPsy11, transposase OrfA (RefSeq), at 3,960,558 to 3,960,950
_3302
Shewana3_3303: Shewana3_3303 - integrase catalytic subunit (RefSeq), at 3,961,055 to 3,961,774
_3303
Shewana3_3304: Shewana3_3304 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,962,449 to 3,967,569
_3304
Position (kb)
3961
3962 Strain fitness (log2 ratio)
-2
-1
0
1 at 3960.093 kb on + strand at 3960.113 kb on + strand at 3960.190 kb on - strand at 3960.291 kb on + strand at 3960.328 kb on - strand at 3960.343 kb on - strand at 3960.343 kb on - strand at 3960.374 kb on + strand at 3960.382 kb on - strand at 3960.452 kb on + strand at 3960.457 kb on + strand at 3960.473 kb on + strand at 3960.481 kb on - strand at 3960.510 kb on - strand at 3961.815 kb on + strand at 3961.820 kb on + strand at 3961.823 kb on - strand at 3961.858 kb on + strand at 3961.884 kb on - strand at 3961.933 kb on - strand at 3961.933 kb on - strand at 3962.017 kb on + strand at 3962.153 kb on + strand at 3962.183 kb on - strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.481 kb on + strand at 3962.575 kb on - strand at 3962.599 kb on + strand at 3962.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,960,093 + +0.4 3,960,113 + +0.3 3,960,190 - +0.2 3,960,291 + +0.1 3,960,328 - -1.2 3,960,343 - +0.1 3,960,343 - +0.6 3,960,374 + -0.4 3,960,382 - -0.8 3,960,452 + -1.1 3,960,457 + -0.4 3,960,473 + -0.7 3,960,481 - +0.0 3,960,510 - -0.1 3,961,815 + -0.4 3,961,820 + -0.5 3,961,823 - -0.1 3,961,858 + +0.3 3,961,884 - +0.2 3,961,933 - -0.0 3,961,933 - -0.1 3,962,017 + -2.0 3,962,153 + +0.1 3,962,183 - -1.7 3,962,194 + -0.4 3,962,194 + +0.1 3,962,194 + +0.0 3,962,481 + +0.1 3,962,575 - -0.1 3,962,599 + +0.0 3,962,669 + -0.4
Or see this region's nucleotide sequence