Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3302
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
---|---|---|---|---|---|
remove | |||||
3,959,632 | + | Shewana3_3301 | 0.82 | -0.6 | |
3,959,773 | + | Shewana3_3301 | 0.85 | -0.1 | |
3,959,877 | - | Shewana3_3301 | 0.87 | -1.0 | |
3,959,966 | + | Shewana3_3301 | 0.89 | -0.4 | |
3,959,973 | - | Shewana3_3301 | 0.89 | -0.4 | |
3,960,032 | - | -0.1 | |||
3,960,032 | - | +0.2 | |||
3,960,093 | + | +0.4 | |||
3,960,113 | + | +0.3 | |||
3,960,190 | - | +0.2 | |||
3,960,291 | + | +0.1 | |||
3,960,328 | - | -1.2 | |||
3,960,343 | - | +0.1 | |||
3,960,343 | - | +0.6 | |||
3,960,374 | + | -0.4 | |||
3,960,382 | - | -0.8 | |||
3,960,452 | + | -1.1 | |||
3,960,457 | + | -0.4 | |||
3,960,473 | + | -0.7 | |||
3,960,481 | - | +0.0 | |||
3,960,510 | - | -0.1 | |||
3,961,815 | + | -0.4 | |||
3,961,820 | + | -0.5 | |||
3,961,823 | - | -0.1 | |||
3,961,858 | + | +0.3 | |||
3,961,884 | - | +0.2 | |||
3,961,933 | - | -0.0 | |||
3,961,933 | - | -0.1 |
Or see this region's nucleotide sequence