Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3034

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3033 and Shewana3_3034 are separated by 90 nucleotidesShewana3_3034 and Shewana3_3035 overlap by 20 nucleotidesShewana3_3035 and nhaR are separated by 91 nucleotides Shewana3_3033: Shewana3_3033 - L-aspartate oxidase (RefSeq), at 3,638,013 to 3,639,626 _3033 Shewana3_3034: Shewana3_3034 - hypothetical protein (RefSeq), at 3,639,717 to 3,640,157 _3034 Shewana3_3035: Shewana3_3035 - hypothetical protein (RefSeq), at 3,640,138 to 3,640,377 _3035 Shewana3_3036: nhaR - transcriptional activator NhaR (RefSeq), at 3,640,469 to 3,641,377 nhaR Position (kb) 3639 3640 3641Strain fitness (log2 ratio) -1 0 1 2at 3639.663 kb on - strandat 3639.670 kb on + strandat 3639.861 kb on + strand, within Shewana3_3034at 3640.198 kb on + strand, within Shewana3_3035at 3640.206 kb on - strand, within Shewana3_3035at 3640.336 kb on - strand, within Shewana3_3035at 3640.424 kb on + strandat 3640.865 kb on + strand, within nhaRat 3641.137 kb on + strand, within nhaR

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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3,639,663 - +0.7
3,639,670 + +0.3
3,639,861 + Shewana3_3034 0.33 +2.3
3,640,198 + Shewana3_3035 0.25 -1.0
3,640,206 - Shewana3_3035 0.28 +0.9
3,640,336 - Shewana3_3035 0.82 +0.8
3,640,424 + +0.1
3,640,865 + nhaR Shewana3_3036 0.44 -0.2
3,641,137 + nhaR Shewana3_3036 0.73 -0.1

Or see this region's nucleotide sequence