Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2995 and Shewana3_2996 are separated by 156 nucleotides Shewana3_2996 and Shewana3_2997 are separated by 33 nucleotides Shewana3_2997 and Shewana3_2998 are separated by 122 nucleotides
Shewana3_2995: Shewana3_2995 - PfpI family intracellular peptidase (RefSeq), at 3,600,412 to 3,600,972
_2995
Shewana3_2996: Shewana3_2996 - band 7 protein (RefSeq), at 3,601,129 to 3,602,907
_2996
Shewana3_2997: Shewana3_2997 - hypothetical protein (RefSeq), at 3,602,941 to 3,603,576
_2997
Shewana3_2998: Shewana3_2998 - hypothetical protein (RefSeq), at 3,603,699 to 3,604,265
_2998
Position (kb)
3601
3602
3603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3600.515 kb on - strand, within Shewana3_2995 at 3600.638 kb on + strand, within Shewana3_2995 at 3600.667 kb on - strand, within Shewana3_2995 at 3600.876 kb on + strand, within Shewana3_2995 at 3600.884 kb on - strand, within Shewana3_2995 at 3601.213 kb on + strand at 3601.214 kb on - strand at 3601.597 kb on - strand, within Shewana3_2996 at 3601.699 kb on + strand, within Shewana3_2996 at 3601.715 kb on - strand, within Shewana3_2996 at 3601.717 kb on - strand, within Shewana3_2996 at 3602.167 kb on - strand, within Shewana3_2996 at 3602.207 kb on + strand, within Shewana3_2996 at 3602.284 kb on + strand, within Shewana3_2996 at 3602.334 kb on + strand, within Shewana3_2996 at 3602.396 kb on + strand, within Shewana3_2996 at 3602.540 kb on + strand, within Shewana3_2996 at 3602.566 kb on + strand, within Shewana3_2996 at 3602.763 kb on - strand at 3602.825 kb on + strand at 3603.084 kb on - strand, within Shewana3_2997 at 3603.092 kb on + strand, within Shewana3_2997 at 3603.471 kb on - strand, within Shewana3_2997 at 3603.477 kb on - strand, within Shewana3_2997 at 3603.495 kb on - strand, within Shewana3_2997 at 3603.523 kb on + strand at 3603.645 kb on - strand at 3603.892 kb on + strand, within Shewana3_2998
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,600,515 - Shewana3_2995 0.18 -1.0 3,600,638 + Shewana3_2995 0.40 +0.5 3,600,667 - Shewana3_2995 0.45 -1.0 3,600,876 + Shewana3_2995 0.83 +0.9 3,600,884 - Shewana3_2995 0.84 +2.7 3,601,213 + +0.1 3,601,214 - -0.5 3,601,597 - Shewana3_2996 0.26 -0.8 3,601,699 + Shewana3_2996 0.32 -0.5 3,601,715 - Shewana3_2996 0.33 +0.2 3,601,717 - Shewana3_2996 0.33 +0.4 3,602,167 - Shewana3_2996 0.58 -0.3 3,602,207 + Shewana3_2996 0.61 -1.3 3,602,284 + Shewana3_2996 0.65 +2.3 3,602,334 + Shewana3_2996 0.68 +0.7 3,602,396 + Shewana3_2996 0.71 -1.0 3,602,540 + Shewana3_2996 0.79 +0.6 3,602,566 + Shewana3_2996 0.81 -1.2 3,602,763 - +0.0 3,602,825 + +2.3 3,603,084 - Shewana3_2997 0.22 -2.4 3,603,092 + Shewana3_2997 0.24 -0.7 3,603,471 - Shewana3_2997 0.83 +0.4 3,603,477 - Shewana3_2997 0.84 -1.2 3,603,495 - Shewana3_2997 0.87 -1.0 3,603,523 + +1.1 3,603,645 - -0.7 3,603,892 + Shewana3_2998 0.34 -0.5
Or see this region's nucleotide sequence