Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2970 and Shewana3_2971 are separated by 255 nucleotides Shewana3_2971 and Shewana3_2972 are separated by 20 nucleotides Shewana3_2972 and Shewana3_2973 are separated by 41 nucleotides Shewana3_2973 and Shewana3_2974 are separated by 77 nucleotides
Shewana3_2970: Shewana3_2970 - HAAAP family transport protein (RefSeq), at 3,570,711 to 3,571,982
_2970
Shewana3_2971: Shewana3_2971 - putative endoribonuclease L-PSP (RefSeq), at 3,572,238 to 3,572,621
_2971
Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916
_2972
Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638
_2973
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Position (kb)
3572
3573
3574 Strain fitness (log2 ratio)
-1
0
1
2 at 3571.983 kb on + strand at 3572.266 kb on + strand at 3572.364 kb on + strand, within Shewana3_2971 at 3572.696 kb on + strand at 3572.697 kb on + strand at 3572.820 kb on + strand, within Shewana3_2972 at 3573.281 kb on + strand, within Shewana3_2972 at 3573.402 kb on + strand, within Shewana3_2972 at 3573.971 kb on + strand at 3574.070 kb on + strand, within Shewana3_2973 at 3574.070 kb on + strand, within Shewana3_2973 at 3574.086 kb on + strand, within Shewana3_2973 at 3574.661 kb on + strand at 3574.661 kb on + strand at 3574.760 kb on - strand at 3574.824 kb on + strand at 3574.911 kb on + strand, within Shewana3_2974
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,571,983 + -0.7 3,572,266 + -0.4 3,572,364 + Shewana3_2971 0.33 +0.0 3,572,696 + +2.6 3,572,697 + -0.1 3,572,820 + Shewana3_2972 0.14 +0.3 3,573,281 + Shewana3_2972 0.50 +0.5 3,573,402 + Shewana3_2972 0.60 -0.6 3,573,971 + +0.1 3,574,070 + Shewana3_2973 0.16 -0.5 3,574,070 + Shewana3_2973 0.16 -1.1 3,574,086 + Shewana3_2973 0.19 +0.5 3,574,661 + +0.3 3,574,661 + +0.3 3,574,760 - +0.2 3,574,824 + +0.8 3,574,911 + Shewana3_2974 0.11 +0.3
Or see this region's nucleotide sequence