Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2943
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
---|---|---|---|---|---|
remove | |||||
3,532,413 | - | Shewana3_2942 | 0.38 | -0.2 | |
3,532,605 | - | Shewana3_2942 | 0.53 | +1.7 | |
3,532,712 | + | Shewana3_2942 | 0.61 | -0.7 | |
3,532,807 | - | Shewana3_2942 | 0.68 | -0.9 | |
3,533,124 | + | +0.1 | |||
3,533,132 | + | +3.3 | |||
3,533,140 | - | +0.4 | |||
3,533,205 | + | -0.2 | |||
3,533,230 | - | -0.3 | |||
3,533,290 | - | -0.7 | |||
3,533,290 | - | -0.3 | |||
3,533,294 | - | +0.1 | |||
3,533,494 | - | -0.5 | |||
3,533,539 | + | -1.4 | |||
3,533,571 | - | Shewana3_2943 | 0.12 | -0.5 | |
3,533,802 | + | Shewana3_2943 | 0.26 | +1.3 | |
3,533,887 | + | Shewana3_2943 | 0.31 | +0.3 | |
3,533,958 | + | Shewana3_2943 | 0.35 | -0.2 | |
3,534,160 | + | Shewana3_2943 | 0.48 | +1.4 | |
3,534,588 | - | Shewana3_2943 | 0.73 | +0.1 | |
3,534,589 | - | Shewana3_2943 | 0.74 | -1.3 | |
3,534,973 | + | +1.3 | |||
3,535,449 | + | -0.3 | |||
3,535,924 | - | +0.5 |
Or see this region's nucleotide sequence