Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2847
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 3,408,221 | + | -0.4 | |||
| 3,408,227 | + | -0.3 | |||
| 3,408,235 | - | +1.6 | |||
| 3,408,320 | + | Shewana3_2847 | 0.25 | -0.4 | |
| 3,408,320 | + | Shewana3_2847 | 0.25 | -0.1 | |
| 3,408,328 | - | Shewana3_2847 | 0.29 | -1.2 | |
| 3,408,328 | - | Shewana3_2847 | 0.29 | +0.0 | |
| 3,408,345 | + | Shewana3_2847 | 0.38 | -0.3 | |
| 3,408,481 | + | +0.8 | |||
| 3,408,538 | + | +0.5 | |||
| 3,408,655 | + | +0.3 | |||
| 3,409,025 | - | Shewana3_2848 | 0.24 | -1.1 | |
| 3,409,062 | + | Shewana3_2848 | 0.26 | +0.9 | |
| 3,409,193 | - | Shewana3_2848 | 0.34 | +0.0 | |
| 3,409,193 | - | Shewana3_2848 | 0.34 | -0.5 | |
| 3,409,219 | - | Shewana3_2848 | 0.35 | +0.6 | |
| 3,409,289 | - | Shewana3_2848 | 0.39 | -0.8 | |
| 3,409,315 | + | Shewana3_2848 | 0.41 | -0.7 | |
| 3,409,315 | + | Shewana3_2848 | 0.41 | -1.0 | |
| 3,409,342 | + | Shewana3_2848 | 0.43 | +0.1 |
Or see this region's nucleotide sequence