Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2748 and Shewana3_2749 overlap by 11 nucleotides Shewana3_2749 and Shewana3_2750 overlap by 4 nucleotides
Shewana3_2748: Shewana3_2748 - ABC-2 type transporter (RefSeq), at 3,279,670 to 3,280,791
_2748
Shewana3_2749: Shewana3_2749 - ABC transporter related (RefSeq), at 3,280,781 to 3,281,821
_2749
Shewana3_2750: Shewana3_2750 - secretion protein HlyD family protein (RefSeq), at 3,281,818 to 3,282,831
_2750
Position (kb)
3280
3281
3282 Strain fitness (log2 ratio)
-2
-1
0
1 at 3279.793 kb on + strand, within Shewana3_2748 at 3279.903 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.119 kb on + strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.127 kb on - strand, within Shewana3_2748 at 3280.150 kb on - strand, within Shewana3_2748 at 3280.181 kb on - strand, within Shewana3_2748 at 3280.224 kb on - strand, within Shewana3_2748 at 3280.272 kb on + strand, within Shewana3_2748 at 3280.304 kb on - strand, within Shewana3_2748 at 3280.368 kb on + strand, within Shewana3_2748 at 3280.443 kb on - strand, within Shewana3_2748 at 3280.806 kb on + strand at 3280.806 kb on + strand at 3280.807 kb on - strand at 3281.152 kb on + strand, within Shewana3_2749 at 3281.387 kb on + strand, within Shewana3_2749 at 3281.470 kb on + strand, within Shewana3_2749 at 3281.573 kb on + strand, within Shewana3_2749 at 3281.613 kb on + strand, within Shewana3_2749 at 3281.807 kb on + strand at 3281.840 kb on - strand at 3282.148 kb on + strand, within Shewana3_2750 at 3282.247 kb on - strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.292 kb on + strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.305 kb on - strand, within Shewana3_2750 at 3282.372 kb on - strand, within Shewana3_2750 at 3282.442 kb on + strand, within Shewana3_2750 at 3282.511 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,279,793 + Shewana3_2748 0.11 +0.5 3,279,903 + Shewana3_2748 0.21 -0.2 3,280,119 + Shewana3_2748 0.40 -0.9 3,280,119 + Shewana3_2748 0.40 +0.7 3,280,127 - Shewana3_2748 0.41 -0.9 3,280,127 - Shewana3_2748 0.41 -0.9 3,280,150 - Shewana3_2748 0.43 -0.1 3,280,181 - Shewana3_2748 0.46 +0.1 3,280,224 - Shewana3_2748 0.49 -0.2 3,280,272 + Shewana3_2748 0.54 +1.1 3,280,304 - Shewana3_2748 0.57 -0.8 3,280,368 + Shewana3_2748 0.62 -0.7 3,280,443 - Shewana3_2748 0.69 +0.2 3,280,806 + +0.4 3,280,806 + -2.0 3,280,807 - -0.6 3,281,152 + Shewana3_2749 0.36 -0.8 3,281,387 + Shewana3_2749 0.58 +0.4 3,281,470 + Shewana3_2749 0.66 +0.4 3,281,573 + Shewana3_2749 0.76 -0.9 3,281,613 + Shewana3_2749 0.80 -2.2 3,281,807 + -0.3 3,281,840 - +0.1 3,282,148 + Shewana3_2750 0.33 +0.5 3,282,247 - Shewana3_2750 0.42 -0.1 3,282,285 + Shewana3_2750 0.46 -0.4 3,282,285 + Shewana3_2750 0.46 +0.6 3,282,285 + Shewana3_2750 0.46 +0.0 3,282,292 + Shewana3_2750 0.47 -0.4 3,282,293 - Shewana3_2750 0.47 +0.4 3,282,293 - Shewana3_2750 0.47 +0.1 3,282,293 - Shewana3_2750 0.47 +0.1 3,282,305 - Shewana3_2750 0.48 +0.1 3,282,372 - Shewana3_2750 0.55 -0.0 3,282,442 + Shewana3_2750 0.62 +0.4 3,282,511 - Shewana3_2750 0.68 +0.3 3,282,665 - Shewana3_2750 0.84 -0.3 3,282,665 - Shewana3_2750 0.84 +0.3
Or see this region's nucleotide sequence