Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2738 and Shewana3_2739 are separated by 252 nucleotides Shewana3_2739 and Shewana3_2740 are separated by 125 nucleotides Shewana3_2740 and Shewana3_2741 are separated by 303 nucleotides
Shewana3_2738: Shewana3_2738 - hypothetical protein (RefSeq), at 3,269,967 to 3,270,791
_2738
Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616
_2739
Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140
_2740
Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046
_2741
Position (kb)
3271
3272
3273 Strain fitness (log2 ratio)
-1
0
1 at 3270.865 kb on + strand at 3271.310 kb on + strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.318 kb on - strand, within Shewana3_2739 at 3271.441 kb on - strand, within Shewana3_2739 at 3271.629 kb on - strand at 3271.638 kb on - strand at 3271.667 kb on + strand at 3271.667 kb on + strand at 3272.305 kb on + strand at 3272.332 kb on + strand at 3272.369 kb on - strand at 3272.411 kb on - strand at 3272.444 kb on + strand at 3272.452 kb on - strand at 3272.543 kb on + strand, within Shewana3_2741 at 3272.551 kb on - strand, within Shewana3_2741 at 3272.931 kb on - strand, within Shewana3_2741 at 3272.968 kb on + strand, within Shewana3_2741
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,270,865 + -0.8 3,271,310 + Shewana3_2739 0.46 +0.2 3,271,318 - Shewana3_2739 0.48 +0.4 3,271,318 - Shewana3_2739 0.48 +0.6 3,271,441 - Shewana3_2739 0.69 +0.3 3,271,629 - -0.2 3,271,638 - +1.4 3,271,667 + +1.1 3,271,667 + +1.4 3,272,305 + -0.3 3,272,332 + -0.2 3,272,369 - +0.4 3,272,411 - +1.0 3,272,444 + +0.8 3,272,452 - -0.6 3,272,543 + Shewana3_2741 0.16 -0.6 3,272,551 - Shewana3_2741 0.18 -1.5 3,272,931 - Shewana3_2741 0.81 -0.8 3,272,968 + Shewana3_2741 0.87 -0.7
Or see this region's nucleotide sequence