Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2606 and Shewana3_2607 are separated by 98 nucleotides Shewana3_2607 and Shewana3_2608 are separated by 57 nucleotides Shewana3_2608 and Shewana3_2609 are separated by 125 nucleotides Shewana3_2609 and Shewana3_2610 are separated by 351 nucleotides
Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968
_2606
Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504
_2607
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655
_2609
Shewana3_2610: Shewana3_2610 - peptidase M23B (RefSeq), at 3,114,007 to 3,115,302
_2610
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-1
0
1
2 at 3111.988 kb on - strand at 3112.052 kb on + strand at 3112.163 kb on - strand, within Shewana3_2607 at 3112.231 kb on - strand, within Shewana3_2607 at 3112.301 kb on + strand, within Shewana3_2607 at 3112.552 kb on + strand at 3112.560 kb on - strand at 3112.560 kb on - strand at 3113.371 kb on + strand, within Shewana3_2609 at 3113.583 kb on + strand, within Shewana3_2609 at 3113.760 kb on - strand at 3113.840 kb on - strand at 3113.911 kb on - strand at 3113.921 kb on + strand at 3113.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 3,111,988 - +1.5 3,112,052 + +0.2 3,112,163 - Shewana3_2607 0.22 +1.0 3,112,231 - Shewana3_2607 0.37 +2.5 3,112,301 + Shewana3_2607 0.53 +0.2 3,112,552 + +1.5 3,112,560 - -0.0 3,112,560 - -0.4 3,113,371 + Shewana3_2609 0.38 -0.5 3,113,583 + Shewana3_2609 0.84 -0.7 3,113,760 - +0.9 3,113,840 - +2.5 3,113,911 - +0.1 3,113,921 + -0.4 3,113,931 - +1.5
Or see this region's nucleotide sequence