Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2366

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2365 and rnhA are separated by 70 nucleotidesrnhA and Shewana3_2367 are separated by 36 nucleotidesShewana3_2367 and Shewana3_2368 are separated by 23 nucleotides Shewana3_2365: Shewana3_2365 - DNA polymerase III, epsilon subunit (RefSeq), at 2,844,011 to 2,844,739 _2365 Shewana3_2366: rnhA - ribonuclease H (RefSeq), at 2,844,810 to 2,845,286 rnhA Shewana3_2367: Shewana3_2367 - LysR family transcriptional regulator (RefSeq), at 2,845,323 to 2,846,222 _2367 Shewana3_2368: Shewana3_2368 - methyltransferase type 11 (RefSeq), at 2,846,246 to 2,846,980 _2368 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -1 0 1at 2843.837 kb on + strandat 2843.837 kb on + strandat 2844.870 kb on - strand, within rnhAat 2845.080 kb on + strand, within rnhAat 2845.433 kb on - strand, within Shewana3_2367at 2845.438 kb on - strand, within Shewana3_2367at 2845.471 kb on - strand, within Shewana3_2367at 2845.506 kb on + strand, within Shewana3_2367

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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2,843,837 + -1.2
2,843,837 + +0.9
2,844,870 - rnhA Shewana3_2366 0.13 -0.7
2,845,080 + rnhA Shewana3_2366 0.57 -0.5
2,845,433 - Shewana3_2367 0.12 +0.4
2,845,438 - Shewana3_2367 0.13 +0.1
2,845,471 - Shewana3_2367 0.16 -0.4
2,845,506 + Shewana3_2367 0.20 +0.5

Or see this region's nucleotide sequence