Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2238 and Shewana3_2239 are separated by 126 nucleotides Shewana3_2239 and Shewana3_2240 are separated by 75 nucleotides
Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966
_2238
Shewana3_2239: Shewana3_2239 - GCN5-related N-acetyltransferase (RefSeq), at 2,693,093 to 2,693,545
_2239
Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487
_2240
Position (kb)
2693
2694 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2692.104 kb on + strand at 2692.239 kb on + strand at 2692.589 kb on + strand at 2692.849 kb on + strand, within Shewana3_2238 at 2692.873 kb on - strand, within Shewana3_2238 at 2692.915 kb on + strand, within Shewana3_2238 at 2692.937 kb on + strand at 2693.018 kb on + strand at 2693.072 kb on + strand at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.448 kb on - strand, within Shewana3_2239 at 2693.508 kb on + strand at 2693.552 kb on + strand at 2693.812 kb on + strand, within Shewana3_2240 at 2693.995 kb on + strand, within Shewana3_2240 at 2694.096 kb on - strand, within Shewana3_2240 at 2694.179 kb on + strand, within Shewana3_2240 at 2694.188 kb on + strand, within Shewana3_2240 at 2694.456 kb on - strand at 2694.539 kb on + strand at 2694.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 2,692,104 + +2.5 2,692,239 + -0.1 2,692,589 + -0.7 2,692,849 + Shewana3_2238 0.68 -0.0 2,692,873 - Shewana3_2238 0.75 +0.9 2,692,915 + Shewana3_2238 0.86 -0.4 2,692,937 + +0.1 2,693,018 + -1.1 2,693,072 + -0.3 2,693,284 + Shewana3_2239 0.42 +0.5 2,693,284 + Shewana3_2239 0.42 -1.8 2,693,284 + Shewana3_2239 0.42 +1.2 2,693,284 + Shewana3_2239 0.42 +0.4 2,693,292 - Shewana3_2239 0.44 +2.5 2,693,292 - Shewana3_2239 0.44 +0.8 2,693,448 - Shewana3_2239 0.78 +2.5 2,693,508 + +0.1 2,693,552 + -1.1 2,693,812 + Shewana3_2240 0.22 +1.5 2,693,995 + Shewana3_2240 0.43 -0.1 2,694,096 - Shewana3_2240 0.55 +1.5 2,694,179 + Shewana3_2240 0.64 -1.0 2,694,188 + Shewana3_2240 0.65 +0.1 2,694,456 - +1.7 2,694,539 + -0.5 2,694,539 + -0.5
Or see this region's nucleotide sequence