Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2173 and Shewana3_2174 are separated by 66 nucleotides Shewana3_2174 and Shewana3_2175 are separated by 113 nucleotides Shewana3_2175 and Shewana3_2176 overlap by 4 nucleotides
Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713
_2173
Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415
_2174
Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851
_2175
Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494
_2176
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2606.641 kb on + strand, within Shewana3_2173 at 2606.950 kb on + strand, within Shewana3_2174 at 2606.952 kb on + strand, within Shewana3_2174 at 2607.097 kb on + strand, within Shewana3_2174 at 2607.486 kb on - strand at 2607.621 kb on + strand at 2607.982 kb on - strand, within Shewana3_2175 at 2608.280 kb on + strand, within Shewana3_2175 at 2608.473 kb on + strand, within Shewana3_2175 at 2608.815 kb on + strand at 2608.831 kb on + strand at 2608.833 kb on + strand at 2608.841 kb on - strand at 2609.421 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.537 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.700 kb on + strand, within Shewana3_2176
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 2,606,641 + Shewana3_2173 0.90 -0.1 2,606,950 + Shewana3_2174 0.27 -0.1 2,606,952 + Shewana3_2174 0.27 +2.5 2,607,097 + Shewana3_2174 0.50 -1.2 2,607,486 - +1.5 2,607,621 + +0.5 2,607,982 - Shewana3_2175 0.34 +2.5 2,608,280 + Shewana3_2175 0.57 +2.5 2,608,473 + Shewana3_2175 0.71 +1.5 2,608,815 + +1.5 2,608,831 + +3.5 2,608,833 + +2.5 2,608,841 - +0.5 2,609,421 + Shewana3_2176 0.35 +1.5 2,609,505 + Shewana3_2176 0.40 +0.1 2,609,505 + Shewana3_2176 0.40 -0.1 2,609,537 - Shewana3_2176 0.42 +2.5 2,609,667 - Shewana3_2176 0.50 +1.5 2,609,667 - Shewana3_2176 0.50 +1.5 2,609,667 - Shewana3_2176 0.50 +2.5 2,609,700 + Shewana3_2176 0.52 +1.5
Or see this region's nucleotide sequence