Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1962
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 2,334,632 | + | Shewana3_1960 | 0.61 | -1.0 | |
| 2,334,952 | - | Shewana3_1960 | 0.89 | +1.7 | |
| 2,335,024 | + | +0.3 | |||
| 2,335,558 | + | Shewana3_1962 | 0.57 | +1.2 | |
| 2,335,845 | - | -0.0 | |||
| 2,335,938 | - | ansA | Shewana3_1963 | 0.19 | -0.2 |
| 2,336,041 | - | ansA | Shewana3_1963 | 0.29 | +0.5 |
| 2,336,150 | - | ansA | Shewana3_1963 | 0.40 | -1.2 |
| 2,336,215 | + | ansA | Shewana3_1963 | 0.46 | +1.5 |
| 2,336,463 | + | +2.5 | |||
| 2,336,541 | - | ansA | Shewana3_1963 | 0.78 | -1.3 |
Or see this region's nucleotide sequence