Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1811

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
2,135,834	+		Shewana3_1810	0.14	+2.5
2,135,834	+		Shewana3_1810	0.14	+2.5
2,135,842	-		Shewana3_1810	0.17	-0.0
2,135,842	-		Shewana3_1810	0.17	-1.0
2,135,842	-		Shewana3_1810	0.17	-1.2
2,135,842	-		Shewana3_1810	0.17	+0.5
2,135,842	-		Shewana3_1810	0.17	-0.6
2,135,847	-		Shewana3_1810	0.19	+1.5
2,135,901	+		Shewana3_1810	0.40	+1.0
2,135,959	-		Shewana3_1810	0.63	+2.5
2,135,976	+		Shewana3_1810	0.69	+2.5
2,135,981	+		Shewana3_1810	0.71	+0.2
2,135,982	-		Shewana3_1810	0.72	-0.0
2,135,984	-		Shewana3_1810	0.72	+0.4
2,135,997	+		Shewana3_1810	0.78	+3.5
2,136,314	+				+0.8
2,136,314	+				+1.0
2,136,319	+				+1.5
2,136,327	-				+2.5
2,136,366	+				+2.0
2,136,400	-				+1.8
2,136,413	-				+0.5
2,136,441	+				-0.6
2,136,448	-				+1.5
2,136,570	+				+2.1
2,136,576	+				-1.3
2,136,722	+				+1.5
2,136,757	-				+1.0
2,136,757	-				+0.2
2,136,758	+				+1.0
2,136,813	+				+0.3
2,136,823	+				+0.2
2,136,965	-		Shewana3_1811	0.18	+0.5
2,136,973	-		Shewana3_1811	0.18	+2.5
2,137,048	-		Shewana3_1811	0.24	+1.5
2,137,114	-		Shewana3_1811	0.28	-0.8
2,137,115	+		Shewana3_1811	0.28	+1.4
2,137,123	-		Shewana3_1811	0.29	+1.0
2,137,246	+		Shewana3_1811	0.37	+0.5
2,137,271	-		Shewana3_1811	0.39	+1.5
2,137,488	+		Shewana3_1811	0.54	+1.5
2,137,512	+		Shewana3_1811	0.56	+1.5
2,137,512	+		Shewana3_1811	0.56	-0.5
2,137,512	+		Shewana3_1811	0.56	-0.8
2,137,520	-		Shewana3_1811	0.57	+1.5
2,137,669	+		Shewana3_1811	0.67	+1.2
2,137,755	-		Shewana3_1811	0.73	-0.5
2,137,759	+		Shewana3_1811	0.73	-0.8
2,137,813	-		Shewana3_1811	0.77	+1.0
2,137,868	+		Shewana3_1811	0.81	-1.0
2,137,869	-		Shewana3_1811	0.81	+0.5
2,137,869	-		Shewana3_1811	0.81	+2.5
2,138,186	+				-0.0
2,138,266	+				-0.0
2,138,266	+				+0.6
2,138,266	+				+0.5
2,138,274	-				+2.5
2,138,274	-				+0.5
2,138,519	+		Shewana3_1812	0.20	-1.8
2,138,767	-		Shewana3_1812	0.36	+1.2
2,138,855	+		Shewana3_1812	0.42	-0.3
2,138,874	+		Shewana3_1812	0.43	-1.0
2,138,882	-		Shewana3_1812	0.44	+1.0
2,138,905	+		Shewana3_1812	0.45	+4.7
2,138,959	+		Shewana3_1812	0.49	-0.0
2,139,003	+		Shewana3_1812	0.52	+0.3
2,139,074	-		Shewana3_1812	0.56	+1.5