Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1717 and Shewana3_1718 are separated by 23 nucleotides Shewana3_1718 and Shewana3_1719 are separated by 263 nucleotides Shewana3_1719 and Shewana3_1720 are separated by 126 nucleotides
Shewana3_1717: Shewana3_1717 - NAD-dependent deacetylase (RefSeq), at 2,020,983 to 2,021,726
_1717
Shewana3_1718: Shewana3_1718 - hypothetical protein (RefSeq), at 2,021,750 to 2,022,214
_1718
Shewana3_1719: Shewana3_1719 - hypothetical protein (RefSeq), at 2,022,478 to 2,022,840
_1719
Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914
_1720
Position (kb)
2022
2023 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2021.613 kb on - strand, within Shewana3_1717 at 2021.723 kb on - strand at 2021.723 kb on - strand at 2021.826 kb on - strand, within Shewana3_1718 at 2022.016 kb on - strand, within Shewana3_1718 at 2022.113 kb on + strand, within Shewana3_1718 at 2022.216 kb on - strand at 2022.471 kb on - strand at 2022.633 kb on + strand, within Shewana3_1719 at 2023.143 kb on + strand, within Shewana3_1720 at 2023.416 kb on + strand, within Shewana3_1720 at 2023.424 kb on - strand, within Shewana3_1720 at 2023.556 kb on + strand, within Shewana3_1720 at 2023.564 kb on - strand, within Shewana3_1720 at 2023.753 kb on + strand, within Shewana3_1720
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 2,021,613 - Shewana3_1717 0.85 +2.8 2,021,723 - +0.9 2,021,723 - +2.5 2,021,826 - Shewana3_1718 0.16 +0.2 2,022,016 - Shewana3_1718 0.57 +1.5 2,022,113 + Shewana3_1718 0.78 +0.9 2,022,216 - -0.1 2,022,471 - -0.8 2,022,633 + Shewana3_1719 0.43 -1.1 2,023,143 + Shewana3_1720 0.19 -1.4 2,023,416 + Shewana3_1720 0.47 -1.0 2,023,424 - Shewana3_1720 0.48 +0.2 2,023,556 + Shewana3_1720 0.62 -1.8 2,023,564 - Shewana3_1720 0.63 +0.5 2,023,753 + Shewana3_1720 0.83 -0.1
Or see this region's nucleotide sequence