Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1583
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
---|---|---|---|---|---|
remove | |||||
1,851,499 | - | Shewana3_1582 | 0.32 | +0.5 | |
1,851,819 | + | Shewana3_1582 | 0.80 | +1.9 | |
1,852,121 | - | -0.7 | |||
1,852,179 | + | -0.9 | |||
1,852,260 | + | +0.5 | |||
1,852,268 | - | +0.1 | |||
1,852,268 | - | +0.4 | |||
1,852,583 | - | Shewana3_1583 | 0.57 | +0.1 | |
1,852,661 | + | Shewana3_1583 | 0.71 | -0.2 | |
1,852,686 | + | Shewana3_1583 | 0.75 | -0.2 | |
1,852,741 | + | Shewana3_1583 | 0.85 | -3.5 | |
1,852,749 | - | Shewana3_1583 | 0.87 | +0.1 | |
1,852,948 | + | +2.4 | |||
1,852,948 | + | +0.5 |
Or see this region's nucleotide sequence