Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1536 and Shewana3_1537 are separated by 144 nucleotides Shewana3_1537 and Shewana3_1538 are separated by 52 nucleotides Shewana3_1538 and Shewana3_1539 are separated by 3 nucleotides
Shewana3_1536: Shewana3_1536 - hypothetical protein (RefSeq), at 1,791,925 to 1,792,992
_1536
Shewana3_1537: Shewana3_1537 - GDSL family lipase (RefSeq), at 1,793,137 to 1,793,736
_1537
Shewana3_1538: Shewana3_1538 - ABC transporter related (RefSeq), at 1,793,789 to 1,794,538
_1538
Shewana3_1539: Shewana3_1539 - hypothetical protein (RefSeq), at 1,794,542 to 1,797,043
_1539
Position (kb)
1793
1794 Strain fitness (log2 ratio)
-2
-1
0
1 at 1792.218 kb on - strand, within Shewana3_1536 at 1792.232 kb on - strand, within Shewana3_1536 at 1792.454 kb on - strand, within Shewana3_1536 at 1792.458 kb on + strand, within Shewana3_1536 at 1793.289 kb on - strand, within Shewana3_1537 at 1793.635 kb on + strand, within Shewana3_1537 at 1793.698 kb on - strand at 1793.931 kb on + strand, within Shewana3_1538 at 1793.964 kb on - strand, within Shewana3_1538 at 1794.130 kb on - strand, within Shewana3_1538 at 1794.190 kb on - strand, within Shewana3_1538 at 1794.197 kb on + strand, within Shewana3_1538 at 1794.205 kb on - strand, within Shewana3_1538 at 1794.230 kb on + strand, within Shewana3_1538 at 1794.338 kb on - strand, within Shewana3_1538 at 1794.405 kb on + strand, within Shewana3_1538 at 1794.478 kb on + strand at 1794.629 kb on - strand at 1794.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 1,792,218 - Shewana3_1536 0.27 +0.3 1,792,232 - Shewana3_1536 0.29 +0.9 1,792,454 - Shewana3_1536 0.50 +1.4 1,792,458 + Shewana3_1536 0.50 -1.0 1,793,289 - Shewana3_1537 0.25 +0.1 1,793,635 + Shewana3_1537 0.83 -2.4 1,793,698 - -1.2 1,793,931 + Shewana3_1538 0.19 +1.0 1,793,964 - Shewana3_1538 0.23 +0.1 1,794,130 - Shewana3_1538 0.45 +1.0 1,794,190 - Shewana3_1538 0.53 +0.6 1,794,197 + Shewana3_1538 0.54 +1.6 1,794,205 - Shewana3_1538 0.55 -1.6 1,794,230 + Shewana3_1538 0.59 +0.2 1,794,338 - Shewana3_1538 0.73 +1.4 1,794,405 + Shewana3_1538 0.82 +0.4 1,794,478 + +0.6 1,794,629 - +0.6 1,794,653 - -0.4
Or see this region's nucleotide sequence