Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1036

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1035 and Shewana3_1036 are separated by 191 nucleotidesShewana3_1036 and prfC are separated by 99 nucleotides Shewana3_1035: Shewana3_1035 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 1,209,065 to 1,211,164 _1035 Shewana3_1036: Shewana3_1036 - lipoprotein NlpI (RefSeq), at 1,211,356 to 1,212,258 _1036 Shewana3_1037: prfC - peptide chain release factor 3 (RefSeq), at 1,212,358 to 1,213,938 prfC Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -1 0 1at 1211.287 kb on + strandat 1211.405 kb on + strandat 1211.931 kb on + strand, within Shewana3_1036at 1212.063 kb on + strand, within Shewana3_1036at 1212.606 kb on - strand, within prfCat 1212.654 kb on - strand, within prfCat 1212.950 kb on + strand, within prfCat 1213.134 kb on + strand, within prfC

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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1,211,287 + -0.0
1,211,405 + -0.9
1,211,931 + Shewana3_1036 0.64 -0.5
1,212,063 + Shewana3_1036 0.78 -1.2
1,212,606 - prfC Shewana3_1037 0.16 +0.3
1,212,654 - prfC Shewana3_1037 0.19 +1.1
1,212,950 + prfC Shewana3_1037 0.37 +0.4
1,213,134 + prfC Shewana3_1037 0.49 -0.4

Or see this region's nucleotide sequence