Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0959
Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vanillin 1 mM |
---|---|---|---|---|---|
remove | |||||
1,123,248 | - | Shewana3_0958 | 0.26 | +0.0 | |
1,123,266 | + | Shewana3_0958 | 0.28 | +0.5 | |
1,123,293 | + | Shewana3_0958 | 0.31 | -1.1 | |
1,123,316 | - | Shewana3_0958 | 0.34 | -0.1 | |
1,123,324 | - | Shewana3_0958 | 0.35 | -0.3 | |
1,123,326 | + | Shewana3_0958 | 0.35 | -0.5 | |
1,123,433 | + | Shewana3_0958 | 0.46 | -0.4 | |
1,123,523 | - | Shewana3_0958 | 0.56 | -0.6 | |
1,123,652 | - | Shewana3_0958 | 0.70 | +0.3 | |
1,123,655 | + | Shewana3_0958 | 0.70 | +0.3 | |
1,123,663 | - | Shewana3_0958 | 0.71 | -0.5 | |
1,123,685 | + | Shewana3_0958 | 0.74 | -0.8 | |
1,123,765 | + | Shewana3_0958 | 0.82 | -1.0 | |
1,123,803 | - | Shewana3_0958 | 0.87 | -1.0 | |
1,123,884 | - | +0.7 | |||
1,123,928 | + | +0.4 | |||
1,123,975 | - | -1.1 | |||
1,124,118 | - | +0.5 |
Or see this region's nucleotide sequence