Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0785 and Shewana3_0786 are separated by 33 nucleotides Shewana3_0786 and Shewana3_0787 are separated by 184 nucleotides Shewana3_0787 and Shewana3_0788 are separated by 268 nucleotides
Shewana3_0785: Shewana3_0785 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 906,609 to 907,196
_0785
Shewana3_0786: Shewana3_0786 - hypothetical protein (RefSeq), at 907,230 to 907,808
_0786
Shewana3_0787: Shewana3_0787 - OmpA-like transmembrane domain-containing protein (RefSeq), at 907,993 to 908,496
_0787
Shewana3_0788: Shewana3_0788 - hypothetical protein (RefSeq), at 908,765 to 909,796
_0788
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1 at 907.166 kb on + strand at 907.406 kb on - strand, within Shewana3_0786 at 907.670 kb on + strand, within Shewana3_0786 at 907.893 kb on + strand at 907.901 kb on - strand at 907.916 kb on - strand at 907.985 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 908.196 kb on + strand, within Shewana3_0787 at 908.237 kb on + strand, within Shewana3_0787 at 908.253 kb on - strand, within Shewana3_0787 at 908.316 kb on - strand, within Shewana3_0787 at 908.359 kb on + strand, within Shewana3_0787 at 908.413 kb on + strand, within Shewana3_0787 at 908.489 kb on - strand at 908.750 kb on + strand at 908.753 kb on - strand at 908.797 kb on - strand at 909.213 kb on + strand, within Shewana3_0788 at 909.213 kb on + strand, within Shewana3_0788 at 909.221 kb on - strand, within Shewana3_0788 at 909.277 kb on - strand, within Shewana3_0788 at 909.286 kb on - strand, within Shewana3_0788 at 909.326 kb on - strand, within Shewana3_0788
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 907,166 + +0.1 907,406 - Shewana3_0786 0.30 -0.2 907,670 + Shewana3_0786 0.76 +0.1 907,893 + -0.0 907,901 - -0.1 907,916 - +0.4 907,985 + -1.3 907,990 + -0.3 907,990 + -0.1 907,990 + +0.3 908,196 + Shewana3_0787 0.40 +0.3 908,237 + Shewana3_0787 0.48 -0.4 908,253 - Shewana3_0787 0.52 -1.1 908,316 - Shewana3_0787 0.64 -1.2 908,359 + Shewana3_0787 0.73 +0.2 908,413 + Shewana3_0787 0.83 +1.7 908,489 - +0.3 908,750 + -0.2 908,753 - +0.1 908,797 - -2.3 909,213 + Shewana3_0788 0.43 +0.3 909,213 + Shewana3_0788 0.43 +0.1 909,221 - Shewana3_0788 0.44 -0.9 909,277 - Shewana3_0788 0.50 +0.2 909,286 - Shewana3_0788 0.50 +0.0 909,326 - Shewana3_0788 0.54 -0.2
Or see this region's nucleotide sequence