Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Position (kb) 872
873
874 Strain fitness (log2 ratio) -1
0
1 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand at 872.325 kb on - strand, within Shewana3_0752 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752 at 873.077 kb on + strand, within Shewana3_0752 at 873.083 kb on - strand, within Shewana3_0752 at 873.143 kb on - strand, within Shewana3_0752 at 873.146 kb on + strand, within Shewana3_0752 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 871,226 - +1.3 871,252 + -0.1 871,254 - +0.4 871,632 - Shewana3_0751 0.25 +0.2 871,632 - Shewana3_0751 0.25 -0.1 871,632 - Shewana3_0751 0.25 -0.3 871,826 + Shewana3_0751 0.67 +1.1 871,835 - Shewana3_0751 0.69 +0.0 871,869 - Shewana3_0751 0.76 +0.0 872,076 + +0.3 872,084 - -0.2 872,084 - -0.2 872,241 - -0.2 872,325 - Shewana3_0752 0.15 -0.8 872,640 - Shewana3_0752 0.40 +0.4 872,678 - Shewana3_0752 0.43 -0.1 872,915 - Shewana3_0752 0.61 -0.1 873,077 + Shewana3_0752 0.74 -0.3 873,083 - Shewana3_0752 0.74 -0.4 873,143 - Shewana3_0752 0.79 +0.3 873,146 + Shewana3_0752 0.79 +0.1 873,261 + Shewana3_0752 0.88 +0.4 873,452 + -1.5 873,526 - -0.4 873,555 + Shewana3_0753 0.11 -1.3 873,686 - Shewana3_0753 0.35 -0.9 873,957 - Shewana3_0753 0.85 +0.4 874,080 - +0.9 874,254 + -0.2 874,264 + -0.0 874,303 + +0.2 874,317 + +0.1 874,354 - -0.2 874,378 + -0.4 874,388 - -0.1
Or see this region's nucleotide sequence