Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1 at 870.700 kb on + strand, within Shewana3_0750 at 870.703 kb on - strand, within Shewana3_0750 at 870.782 kb on - strand, within Shewana3_0750 at 870.872 kb on + strand, within Shewana3_0750 at 870.880 kb on - strand, within Shewana3_0750 at 870.922 kb on + strand, within Shewana3_0750 at 870.978 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand at 872.325 kb on - strand, within Shewana3_0752 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 870,700 + Shewana3_0750 0.68 -0.0 870,703 - Shewana3_0750 0.68 +0.5 870,782 - Shewana3_0750 0.73 -2.4 870,872 + Shewana3_0750 0.78 +0.7 870,880 - Shewana3_0750 0.78 -0.1 870,922 + Shewana3_0750 0.81 -2.2 870,978 + Shewana3_0750 0.84 -1.1 871,058 + Shewana3_0750 0.89 -0.5 871,058 + Shewana3_0750 0.89 -1.3 871,226 - +1.3 871,252 + -0.1 871,254 - +0.4 871,632 - Shewana3_0751 0.25 +0.2 871,632 - Shewana3_0751 0.25 -0.1 871,632 - Shewana3_0751 0.25 -0.3 871,826 + Shewana3_0751 0.67 +1.1 871,835 - Shewana3_0751 0.69 +0.0 871,869 - Shewana3_0751 0.76 +0.0 872,076 + +0.3 872,084 - -0.2 872,084 - -0.2 872,241 - -0.2 872,325 - Shewana3_0752 0.15 -0.8 872,640 - Shewana3_0752 0.40 +0.4 872,678 - Shewana3_0752 0.43 -0.1 872,915 - Shewana3_0752 0.61 -0.1
Or see this region's nucleotide sequence