Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0716 and Shewana3_0717 are separated by 75 nucleotides Shewana3_0717 and Shewana3_0718 are separated by 227 nucleotides
Shewana3_0716: Shewana3_0716 - TonB-dependent siderophore receptor (RefSeq), at 833,315 to 835,510
_0716
Shewana3_0717: Shewana3_0717 - putative hydroxylase (RefSeq), at 835,586 to 836,260
_0717
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.599 kb on - strand, within Shewana3_0716 at 834.614 kb on - strand, within Shewana3_0716 at 834.735 kb on + strand, within Shewana3_0716 at 834.810 kb on - strand, within Shewana3_0716 at 834.864 kb on - strand, within Shewana3_0716 at 834.936 kb on + strand, within Shewana3_0716 at 835.261 kb on + strand, within Shewana3_0716 at 835.303 kb on - strand at 835.504 kb on + strand at 835.504 kb on + strand at 835.729 kb on + strand, within Shewana3_0717 at 835.827 kb on - strand, within Shewana3_0717 at 836.223 kb on - strand at 836.304 kb on - strand at 836.770 kb on - strand, within Shewana3_0718 at 836.872 kb on - strand, within Shewana3_0718 at 836.889 kb on + strand, within Shewana3_0718 at 836.921 kb on + strand, within Shewana3_0718 at 836.929 kb on - strand, within Shewana3_0718 at 837.029 kb on + strand, within Shewana3_0718 at 837.077 kb on + strand, within Shewana3_0718 at 837.085 kb on - strand, within Shewana3_0718 at 837.148 kb on - strand, within Shewana3_0718 at 837.240 kb on + strand, within Shewana3_0718
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 834,599 - Shewana3_0716 0.58 -1.4 834,614 - Shewana3_0716 0.59 -2.9 834,735 + Shewana3_0716 0.65 -1.0 834,810 - Shewana3_0716 0.68 -2.2 834,864 - Shewana3_0716 0.71 +0.7 834,936 + Shewana3_0716 0.74 -1.3 835,261 + Shewana3_0716 0.89 -1.9 835,303 - -0.1 835,504 + -2.0 835,504 + -2.9 835,729 + Shewana3_0717 0.21 -2.2 835,827 - Shewana3_0717 0.36 -1.9 836,223 - -1.0 836,304 - +0.1 836,770 - Shewana3_0718 0.28 -1.6 836,872 - Shewana3_0718 0.38 +0.3 836,889 + Shewana3_0718 0.40 -0.3 836,921 + Shewana3_0718 0.43 +0.2 836,929 - Shewana3_0718 0.44 +0.2 837,029 + Shewana3_0718 0.54 +0.2 837,077 + Shewana3_0718 0.59 +0.1 837,085 - Shewana3_0718 0.59 -1.3 837,148 - Shewana3_0718 0.66 -0.8 837,240 + Shewana3_0718 0.75 +0.1
Or see this region's nucleotide sequence