Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0715 and Shewana3_0716 are separated by 568 nucleotides Shewana3_0716 and Shewana3_0717 are separated by 75 nucleotides Shewana3_0717 and Shewana3_0718 are separated by 227 nucleotides
Shewana3_0715: Shewana3_0715 - putative chemotaxis protein CheX (RefSeq), at 832,282 to 832,746
_0715
Shewana3_0716: Shewana3_0716 - TonB-dependent siderophore receptor (RefSeq), at 833,315 to 835,510
_0716
Shewana3_0717: Shewana3_0717 - putative hydroxylase (RefSeq), at 835,586 to 836,260
_0717
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 832.316 kb on - strand at 832.327 kb on + strand at 832.380 kb on - strand, within Shewana3_0715 at 832.403 kb on - strand, within Shewana3_0715 at 832.776 kb on - strand at 832.777 kb on - strand at 832.777 kb on - strand at 833.484 kb on - strand at 833.580 kb on - strand, within Shewana3_0716 at 833.586 kb on - strand, within Shewana3_0716 at 833.645 kb on - strand, within Shewana3_0716 at 833.645 kb on - strand, within Shewana3_0716 at 833.803 kb on - strand, within Shewana3_0716 at 834.174 kb on - strand, within Shewana3_0716 at 834.174 kb on - strand, within Shewana3_0716 at 834.221 kb on + strand, within Shewana3_0716 at 834.357 kb on + strand, within Shewana3_0716 at 834.365 kb on - strand, within Shewana3_0716 at 834.456 kb on + strand, within Shewana3_0716 at 834.456 kb on + strand, within Shewana3_0716 at 834.464 kb on - strand, within Shewana3_0716 at 834.464 kb on - strand, within Shewana3_0716 at 834.468 kb on + strand, within Shewana3_0716 at 834.509 kb on + strand, within Shewana3_0716 at 834.574 kb on - strand, within Shewana3_0716 at 834.599 kb on - strand, within Shewana3_0716 at 834.614 kb on - strand, within Shewana3_0716 at 834.735 kb on + strand, within Shewana3_0716 at 834.810 kb on - strand, within Shewana3_0716 at 834.864 kb on - strand, within Shewana3_0716 at 834.936 kb on + strand, within Shewana3_0716 at 835.261 kb on + strand, within Shewana3_0716 at 835.303 kb on - strand at 835.504 kb on + strand at 835.504 kb on + strand at 835.729 kb on + strand, within Shewana3_0717 at 835.827 kb on - strand, within Shewana3_0717 at 836.223 kb on - strand at 836.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 832,316 - -0.2 832,327 + +3.3 832,380 - Shewana3_0715 0.21 -0.1 832,403 - Shewana3_0715 0.26 -1.0 832,776 - -0.9 832,777 - -0.3 832,777 - +0.1 833,484 - -0.8 833,580 - Shewana3_0716 0.12 -1.6 833,586 - Shewana3_0716 0.12 -1.5 833,645 - Shewana3_0716 0.15 -1.4 833,645 - Shewana3_0716 0.15 -0.5 833,803 - Shewana3_0716 0.22 +0.3 834,174 - Shewana3_0716 0.39 -1.5 834,174 - Shewana3_0716 0.39 +0.3 834,221 + Shewana3_0716 0.41 -1.8 834,357 + Shewana3_0716 0.47 -0.9 834,365 - Shewana3_0716 0.48 -1.8 834,456 + Shewana3_0716 0.52 -1.3 834,456 + Shewana3_0716 0.52 -0.6 834,464 - Shewana3_0716 0.52 +0.1 834,464 - Shewana3_0716 0.52 -1.3 834,468 + Shewana3_0716 0.53 -1.2 834,509 + Shewana3_0716 0.54 -1.3 834,574 - Shewana3_0716 0.57 -1.0 834,599 - Shewana3_0716 0.58 -1.4 834,614 - Shewana3_0716 0.59 -2.9 834,735 + Shewana3_0716 0.65 -1.0 834,810 - Shewana3_0716 0.68 -2.2 834,864 - Shewana3_0716 0.71 +0.7 834,936 + Shewana3_0716 0.74 -1.3 835,261 + Shewana3_0716 0.89 -1.9 835,303 - -0.1 835,504 + -2.0 835,504 + -2.9 835,729 + Shewana3_0717 0.21 -2.2 835,827 - Shewana3_0717 0.36 -1.9 836,223 - -1.0 836,304 - +0.1
Or see this region's nucleotide sequence