Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0715

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalr and Shewana3_0715 are separated by 169 nucleotidesShewana3_0715 and Shewana3_0716 are separated by 568 nucleotides Shewana3_0714: alr - alanine racemase (RefSeq), at 831,036 to 832,112 alr Shewana3_0715: Shewana3_0715 - putative chemotaxis protein CheX (RefSeq), at 832,282 to 832,746 _0715 Shewana3_0716: Shewana3_0716 - TonB-dependent siderophore receptor (RefSeq), at 833,315 to 835,510 _0716 Position (kb) 832 833Strain fitness (log2 ratio) -1 0 1 2 3at 832.258 kb on + strandat 832.316 kb on - strandat 832.327 kb on + strandat 832.380 kb on - strand, within Shewana3_0715at 832.403 kb on - strand, within Shewana3_0715at 832.776 kb on - strandat 832.777 kb on - strandat 832.777 kb on - strandat 833.484 kb on - strandat 833.580 kb on - strand, within Shewana3_0716at 833.586 kb on - strand, within Shewana3_0716at 833.645 kb on - strand, within Shewana3_0716at 833.645 kb on - strand, within Shewana3_0716

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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832,258 + -0.7
832,316 - -0.2
832,327 + +3.3
832,380 - Shewana3_0715 0.21 -0.1
832,403 - Shewana3_0715 0.26 -1.0
832,776 - -0.9
832,777 - -0.3
832,777 - +0.1
833,484 - -0.8
833,580 - Shewana3_0716 0.12 -1.6
833,586 - Shewana3_0716 0.12 -1.5
833,645 - Shewana3_0716 0.15 -1.4
833,645 - Shewana3_0716 0.15 -0.5

Or see this region's nucleotide sequence