Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0678 and Shewana3_0679 overlap by 4 nucleotides Shewana3_0679 and Shewana3_0680 are separated by 54 nucleotides Shewana3_0680 and Shewana3_0681 are separated by 11 nucleotides
Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277
_0678
Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059
_0679
Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587
_0680
Shewana3_0681: Shewana3_0681 - toluene tolerance family protein (RefSeq), at 799,599 to 800,252
_0681
Position (kb) 798
799
800 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 797.366 kb on - strand at 797.409 kb on + strand at 797.651 kb on + strand, within Shewana3_0678 at 797.664 kb on + strand, within Shewana3_0678 at 797.778 kb on + strand, within Shewana3_0678 at 798.117 kb on + strand, within Shewana3_0678 at 798.188 kb on + strand, within Shewana3_0678 at 798.207 kb on + strand at 798.207 kb on + strand at 798.248 kb on + strand at 798.521 kb on + strand, within Shewana3_0679 at 798.550 kb on + strand, within Shewana3_0679 at 798.727 kb on + strand, within Shewana3_0679 at 798.925 kb on + strand, within Shewana3_0679 at 798.938 kb on + strand, within Shewana3_0679 at 798.973 kb on + strand, within Shewana3_0679 at 798.983 kb on + strand at 799.210 kb on + strand, within Shewana3_0680 at 799.229 kb on + strand, within Shewana3_0680 at 799.303 kb on + strand, within Shewana3_0680 at 799.451 kb on + strand, within Shewana3_0680 at 799.549 kb on + strand at 799.679 kb on + strand, within Shewana3_0681 at 799.687 kb on + strand, within Shewana3_0681 at 799.743 kb on + strand, within Shewana3_0681 at 799.803 kb on + strand, within Shewana3_0681 at 799.811 kb on + strand, within Shewana3_0681 at 799.845 kb on + strand, within Shewana3_0681 at 799.915 kb on + strand, within Shewana3_0681
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 797,366 - -0.5 797,409 + -0.8 797,651 + Shewana3_0678 0.23 -1.1 797,664 + Shewana3_0678 0.25 -1.4 797,778 + Shewana3_0678 0.39 -2.0 798,117 + Shewana3_0678 0.80 -3.3 798,188 + Shewana3_0678 0.89 -3.3 798,207 + -2.4 798,207 + -2.3 798,248 + -2.8 798,521 + Shewana3_0679 0.31 -4.2 798,550 + Shewana3_0679 0.35 -2.3 798,727 + Shewana3_0679 0.58 -1.0 798,925 + Shewana3_0679 0.83 -1.0 798,938 + Shewana3_0679 0.84 -1.5 798,973 + Shewana3_0679 0.89 -3.3 798,983 + -1.3 799,210 + Shewana3_0680 0.20 -2.3 799,229 + Shewana3_0680 0.24 -2.6 799,303 + Shewana3_0680 0.40 -3.4 799,451 + Shewana3_0680 0.71 -2.3 799,549 + -4.2 799,679 + Shewana3_0681 0.12 -0.3 799,687 + Shewana3_0681 0.13 -2.7 799,743 + Shewana3_0681 0.22 -2.6 799,803 + Shewana3_0681 0.31 -2.0 799,811 + Shewana3_0681 0.32 -1.5 799,845 + Shewana3_0681 0.38 -5.1 799,915 + Shewana3_0681 0.48 -3.9
Or see this region's nucleotide sequence