Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0632 and Shewana3_0633 are separated by 291 nucleotides Shewana3_0633 and Shewana3_0634 are separated by 62 nucleotides
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138
_0634
Position (kb) 743
744
745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 742.893 kb on - strand, within Shewana3_0632 at 743.143 kb on + strand, within Shewana3_0632 at 743.151 kb on - strand, within Shewana3_0632 at 743.255 kb on + strand, within Shewana3_0632 at 743.257 kb on - strand, within Shewana3_0632 at 743.430 kb on - strand, within Shewana3_0632 at 743.484 kb on - strand at 743.636 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.984 kb on + strand at 744.071 kb on + strand at 744.071 kb on + strand at 744.219 kb on + strand, within Shewana3_0633 at 744.260 kb on - strand, within Shewana3_0633 at 744.267 kb on + strand, within Shewana3_0633 at 744.336 kb on + strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.567 kb on - strand, within Shewana3_0633 at 744.758 kb on - strand, within Shewana3_0633 at 745.093 kb on + strand, within Shewana3_0633 at 745.101 kb on - strand, within Shewana3_0633 at 745.101 kb on - strand, within Shewana3_0633 at 745.114 kb on + strand, within Shewana3_0633 at 745.213 kb on - strand, within Shewana3_0633 at 745.327 kb on + strand, within Shewana3_0633 at 745.514 kb on + strand, within Shewana3_0633 at 745.514 kb on + strand, within Shewana3_0633 at 745.522 kb on - strand, within Shewana3_0633 at 745.522 kb on - strand, within Shewana3_0633 at 745.664 kb on - strand, within Shewana3_0633 at 745.715 kb on - strand, within Shewana3_0633 at 745.759 kb on + strand, within Shewana3_0633 at 745.965 kb on + strand, within Shewana3_0633 at 745.965 kb on + strand, within Shewana3_0633 at 745.973 kb on - strand, within Shewana3_0633 at 746.131 kb on + strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.282 kb on - strand, within Shewana3_0633 at 746.332 kb on - strand, within Shewana3_0633 at 746.491 kb on - strand, within Shewana3_0633 at 746.717 kb on + strand at 746.801 kb on - strand at 746.898 kb on + strand at 746.904 kb on + strand at 746.945 kb on - strand at 746.998 kb on - strand at 747.125 kb on + strand at 747.330 kb on - strand, within Shewana3_0634 at 747.428 kb on + strand, within Shewana3_0634 at 747.448 kb on + strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.494 kb on + strand, within Shewana3_0634 at 747.815 kb on + strand, within Shewana3_0634 at 747.922 kb on + strand, within Shewana3_0634
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 742,893 - Shewana3_0632 0.47 -0.5 743,143 + Shewana3_0632 0.66 -1.3 743,151 - Shewana3_0632 0.67 +0.2 743,255 + Shewana3_0632 0.75 -0.9 743,257 - Shewana3_0632 0.75 -0.0 743,430 - Shewana3_0632 0.88 +0.0 743,484 - -0.1 743,636 + -3.0 743,678 + -0.1 743,678 + -0.8 743,678 + -0.2 743,678 + +0.2 743,984 + -0.3 744,071 + -0.6 744,071 + -0.5 744,219 + Shewana3_0633 0.11 -1.5 744,260 - Shewana3_0633 0.12 +2.0 744,267 + Shewana3_0633 0.13 -0.1 744,336 + Shewana3_0633 0.15 -1.3 744,344 - Shewana3_0633 0.15 -0.1 744,344 - Shewana3_0633 0.15 -0.3 744,344 - Shewana3_0633 0.15 -0.4 744,567 - Shewana3_0633 0.22 -0.9 744,758 - Shewana3_0633 0.28 +0.1 745,093 + Shewana3_0633 0.39 +0.2 745,101 - Shewana3_0633 0.39 +0.8 745,101 - Shewana3_0633 0.39 +0.2 745,114 + Shewana3_0633 0.40 +0.2 745,213 - Shewana3_0633 0.43 +0.3 745,327 + Shewana3_0633 0.47 -0.5 745,514 + Shewana3_0633 0.53 -0.4 745,514 + Shewana3_0633 0.53 -0.3 745,522 - Shewana3_0633 0.53 +1.2 745,522 - Shewana3_0633 0.53 +0.3 745,664 - Shewana3_0633 0.58 -0.3 745,715 - Shewana3_0633 0.59 -0.5 745,759 + Shewana3_0633 0.61 +0.4 745,965 + Shewana3_0633 0.67 +0.2 745,965 + Shewana3_0633 0.67 -0.4 745,973 - Shewana3_0633 0.68 -0.1 746,131 + Shewana3_0633 0.73 -1.0 746,139 - Shewana3_0633 0.73 +0.4 746,139 - Shewana3_0633 0.73 -0.6 746,139 - Shewana3_0633 0.73 +0.2 746,139 - Shewana3_0633 0.73 -0.1 746,197 - Shewana3_0633 0.75 -0.8 746,197 - Shewana3_0633 0.75 -0.5 746,282 - Shewana3_0633 0.77 +0.2 746,332 - Shewana3_0633 0.79 +0.4 746,491 - Shewana3_0633 0.84 -0.3 746,717 + +0.3 746,801 - +0.2 746,898 + -0.3 746,904 + -0.1 746,945 - -0.3 746,998 - +0.6 747,125 + +0.2 747,330 - Shewana3_0634 0.26 +0.8 747,428 + Shewana3_0634 0.35 -0.3 747,448 + Shewana3_0634 0.37 +0.2 747,456 - Shewana3_0634 0.38 -0.7 747,456 - Shewana3_0634 0.38 +1.0 747,494 + Shewana3_0634 0.41 -0.3 747,815 + Shewana3_0634 0.70 -0.5 747,922 + Shewana3_0634 0.80 +0.7
Or see this region's nucleotide sequence