Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0580 and Shewana3_0581 are separated by 199 nucleotides Shewana3_0581 and Shewana3_0582 are separated by 248 nucleotides Shewana3_0582 and Shewana3_0583 are separated by 144 nucleotides
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Shewana3_0581: Shewana3_0581 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 681,448 to 681,639
_0581
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Shewana3_0583: Shewana3_0583 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 683,607 to 684,539
_0583
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.909 kb on - strand, within Shewana3_0580 at 680.939 kb on + strand, within Shewana3_0580 at 680.947 kb on - strand, within Shewana3_0580 at 681.035 kb on - strand, within Shewana3_0580 at 681.575 kb on - strand, within Shewana3_0581 at 682.030 kb on + strand at 682.251 kb on - strand, within Shewana3_0582 at 682.261 kb on - strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582 at 682.696 kb on + strand, within Shewana3_0582 at 682.797 kb on + strand, within Shewana3_0582 at 682.952 kb on + strand, within Shewana3_0582 at 683.065 kb on + strand, within Shewana3_0582 at 683.229 kb on - strand, within Shewana3_0582 at 683.411 kb on + strand at 683.419 kb on - strand at 683.944 kb on - strand, within Shewana3_0583 at 683.986 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.255 kb on + strand, within Shewana3_0583 at 684.263 kb on - strand, within Shewana3_0583 at 684.455 kb on + strand at 684.455 kb on + strand at 684.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 680,909 - Shewana3_0580 0.48 -0.6 680,939 + Shewana3_0580 0.53 -0.8 680,947 - Shewana3_0580 0.54 -0.4 681,035 - Shewana3_0580 0.67 -1.5 681,575 - Shewana3_0581 0.66 +0.1 682,030 + -0.1 682,251 - Shewana3_0582 0.23 -0.5 682,261 - Shewana3_0582 0.24 +1.3 682,321 + Shewana3_0582 0.27 -0.0 682,321 + Shewana3_0582 0.27 -0.4 682,529 + Shewana3_0582 0.41 -0.7 682,529 + Shewana3_0582 0.41 +0.5 682,529 + Shewana3_0582 0.41 -0.4 682,537 - Shewana3_0582 0.41 -1.8 682,537 - Shewana3_0582 0.41 +1.0 682,696 + Shewana3_0582 0.51 +0.9 682,797 + Shewana3_0582 0.58 +2.3 682,952 + Shewana3_0582 0.68 +0.9 683,065 + Shewana3_0582 0.75 -0.1 683,229 - Shewana3_0582 0.85 -0.5 683,411 + +0.2 683,419 - -0.3 683,944 - Shewana3_0583 0.36 +0.0 683,986 - Shewana3_0583 0.41 -2.1 684,083 - Shewana3_0583 0.51 +0.1 684,083 - Shewana3_0583 0.51 -0.2 684,255 + Shewana3_0583 0.69 -0.0 684,263 - Shewana3_0583 0.70 +0.2 684,455 + +0.2 684,455 + -0.4 684,455 + -0.0
Or see this region's nucleotide sequence