Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0574 and Shewana3_0575 are separated by 402 nucleotides Shewana3_0575 and Shewana3_0576 are separated by 220 nucleotides
Shewana3_0574: Shewana3_0574 - ATP-dependent helicase HepA (RefSeq), at 666,930 to 669,836
_0574
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Position (kb) 670
671
672 Strain fitness (log2 ratio) -1
0
1
2 at 669.257 kb on + strand, within Shewana3_0574 at 669.270 kb on + strand, within Shewana3_0574 at 669.374 kb on + strand, within Shewana3_0574 at 669.633 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.692 kb on - strand at 669.717 kb on + strand at 669.743 kb on - strand at 670.021 kb on + strand at 670.021 kb on + strand at 670.031 kb on + strand at 670.039 kb on - strand at 670.039 kb on - strand at 670.226 kb on + strand at 670.279 kb on - strand at 670.313 kb on - strand at 670.571 kb on + strand, within Shewana3_0575 at 670.636 kb on + strand, within Shewana3_0575 at 670.951 kb on + strand, within Shewana3_0575 at 671.507 kb on - strand at 671.574 kb on - strand at 671.970 kb on - strand at 672.073 kb on + strand at 672.108 kb on + strand at 672.229 kb on + strand, within Shewana3_0576 at 672.273 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.312 kb on + strand, within Shewana3_0576 at 672.399 kb on + strand, within Shewana3_0576 at 672.501 kb on + strand, within Shewana3_0576 at 672.520 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576 at 672.539 kb on + strand, within Shewana3_0576
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 669,257 + Shewana3_0574 0.80 +0.1 669,270 + Shewana3_0574 0.80 +1.3 669,374 + Shewana3_0574 0.84 +1.1 669,633 + +0.3 669,684 + -1.5 669,684 + -0.7 669,684 + -0.8 669,692 - -0.4 669,717 + -1.4 669,743 - -0.8 670,021 + -0.2 670,021 + -0.4 670,031 + -0.3 670,039 - -0.4 670,039 - -0.6 670,226 + -0.8 670,279 - -0.2 670,313 - +0.1 670,571 + Shewana3_0575 0.24 +2.0 670,636 + Shewana3_0575 0.28 -0.6 670,951 + Shewana3_0575 0.51 +0.4 671,507 - +0.2 671,574 - -0.6 671,970 - +1.3 672,073 + +0.7 672,108 + +1.1 672,229 + Shewana3_0576 0.10 +1.6 672,273 + Shewana3_0576 0.11 +1.3 672,312 + Shewana3_0576 0.12 +0.7 672,312 + Shewana3_0576 0.12 +1.5 672,399 + Shewana3_0576 0.15 +0.0 672,501 + Shewana3_0576 0.17 -0.5 672,520 + Shewana3_0576 0.18 -0.9 672,539 + Shewana3_0576 0.18 +0.0 672,539 + Shewana3_0576 0.18 +0.3
Or see this region's nucleotide sequence