Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0540 and Shewana3_0541 are separated by 104 nucleotides Shewana3_0541 and Shewana3_0542 are separated by 315 nucleotides Shewana3_0542 and Shewana3_0543 overlap by 4 nucleotides Shewana3_0543 and Shewana3_0544 are separated by 9 nucleotides
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Shewana3_0541: Shewana3_0541 - hypothetical protein (RefSeq), at 635,873 to 636,049
_0541
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Shewana3_0543: Shewana3_0543 - response regulator receiver protein (RefSeq), at 638,521 to 638,955
_0543
Shewana3_0544: Shewana3_0544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase (RefSeq), at 638,965 to 640,683
_0544
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -2
-1
0
1 at 635.667 kb on - strand, within Shewana3_0540 at 635.854 kb on + strand at 635.879 kb on - strand at 635.952 kb on + strand, within Shewana3_0541 at 636.221 kb on - strand at 636.370 kb on - strand at 636.481 kb on + strand at 636.489 kb on - strand at 636.489 kb on - strand at 636.491 kb on - strand at 636.712 kb on - strand, within Shewana3_0542 at 636.761 kb on + strand, within Shewana3_0542 at 636.769 kb on - strand, within Shewana3_0542 at 636.783 kb on + strand, within Shewana3_0542 at 636.784 kb on + strand, within Shewana3_0542 at 636.851 kb on - strand, within Shewana3_0542 at 637.202 kb on + strand, within Shewana3_0542 at 637.210 kb on - strand, within Shewana3_0542 at 637.325 kb on - strand, within Shewana3_0542 at 637.329 kb on + strand, within Shewana3_0542 at 637.336 kb on + strand, within Shewana3_0542 at 637.354 kb on + strand, within Shewana3_0542 at 637.374 kb on - strand, within Shewana3_0542 at 637.384 kb on - strand, within Shewana3_0542 at 637.384 kb on - strand, within Shewana3_0542 at 637.384 kb on - strand, within Shewana3_0542 at 638.001 kb on + strand, within Shewana3_0542 at 638.185 kb on + strand, within Shewana3_0542 at 638.269 kb on - strand, within Shewana3_0542 at 638.350 kb on - strand at 638.361 kb on + strand at 638.454 kb on + strand at 638.462 kb on - strand at 638.518 kb on + strand at 638.518 kb on + strand at 638.629 kb on + strand, within Shewana3_0543 at 638.862 kb on - strand, within Shewana3_0543 at 639.146 kb on + strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.179 kb on + strand, within Shewana3_0544 at 639.183 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 635,667 - Shewana3_0540 0.89 -0.2 635,854 + +0.1 635,879 - -1.2 635,952 + Shewana3_0541 0.45 -0.2 636,221 - -0.3 636,370 - +0.2 636,481 + -0.5 636,489 - -0.0 636,489 - -1.2 636,491 - -0.5 636,712 - Shewana3_0542 0.16 -0.3 636,761 + Shewana3_0542 0.18 -0.0 636,769 - Shewana3_0542 0.19 -2.5 636,783 + Shewana3_0542 0.19 -0.2 636,784 + Shewana3_0542 0.19 +0.2 636,851 - Shewana3_0542 0.23 -1.3 637,202 + Shewana3_0542 0.39 -0.1 637,210 - Shewana3_0542 0.39 +0.1 637,325 - Shewana3_0542 0.44 -0.4 637,329 + Shewana3_0542 0.45 -0.5 637,336 + Shewana3_0542 0.45 -1.5 637,354 + Shewana3_0542 0.46 -0.6 637,374 - Shewana3_0542 0.47 -0.5 637,384 - Shewana3_0542 0.47 +0.1 637,384 - Shewana3_0542 0.47 -1.2 637,384 - Shewana3_0542 0.47 -0.9 638,001 + Shewana3_0542 0.76 +0.1 638,185 + Shewana3_0542 0.84 -0.7 638,269 - Shewana3_0542 0.88 +0.6 638,350 - +1.1 638,361 + -0.5 638,454 + -0.2 638,462 - +0.3 638,518 + -0.0 638,518 + -0.4 638,629 + Shewana3_0543 0.25 +0.1 638,862 - Shewana3_0543 0.78 +1.4 639,146 + Shewana3_0544 0.11 -2.2 639,154 - Shewana3_0544 0.11 +0.2 639,154 - Shewana3_0544 0.11 -0.1 639,179 + Shewana3_0544 0.12 +1.2 639,183 + Shewana3_0544 0.13 +0.1 639,242 + Shewana3_0544 0.16 +0.4 639,242 + Shewana3_0544 0.16 -0.4
Or see this region's nucleotide sequence