Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0512 and Shewana3_0513 are separated by 148 nucleotides Shewana3_0513 and Shewana3_0514 are separated by 36 nucleotides Shewana3_0514 and Shewana3_0515 are separated by 164 nucleotides Shewana3_0515 and Shewana3_0516 are separated by 208 nucleotides
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Shewana3_0513: Shewana3_0513 - hypothetical protein (RefSeq), at 603,323 to 603,688
_0513
Shewana3_0514: Shewana3_0514 - hypothetical protein (RefSeq), at 603,725 to 603,928
_0514
Shewana3_0515: Shewana3_0515 - hypothetical protein (RefSeq), at 604,093 to 604,542
_0515
Shewana3_0516: Shewana3_0516 - outer membrane efflux family protein, putative (RefSeq), at 604,751 to 606,121
_0516
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1 at 603.200 kb on + strand at 603.212 kb on + strand at 603.213 kb on + strand at 603.318 kb on + strand at 603.603 kb on + strand, within Shewana3_0513 at 603.603 kb on + strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.785 kb on + strand, within Shewana3_0514 at 603.803 kb on + strand, within Shewana3_0514 at 603.867 kb on - strand, within Shewana3_0514 at 604.053 kb on - strand at 604.273 kb on + strand, within Shewana3_0515 at 604.573 kb on - strand at 604.619 kb on + strand at 604.629 kb on + strand at 604.637 kb on - strand at 604.647 kb on + strand at 604.655 kb on - strand at 604.705 kb on + strand at 604.784 kb on + strand at 605.020 kb on - strand, within Shewana3_0516 at 605.097 kb on + strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.115 kb on + strand, within Shewana3_0516 at 605.159 kb on - strand, within Shewana3_0516 at 605.224 kb on + strand, within Shewana3_0516 at 605.234 kb on - strand, within Shewana3_0516 at 605.276 kb on - strand, within Shewana3_0516 at 605.295 kb on + strand, within Shewana3_0516 at 605.303 kb on + strand, within Shewana3_0516 at 605.305 kb on + strand, within Shewana3_0516 at 605.311 kb on - strand, within Shewana3_0516 at 605.326 kb on - strand, within Shewana3_0516
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 603,200 + -0.6 603,212 + -0.3 603,213 + -0.1 603,318 + -0.8 603,603 + Shewana3_0513 0.77 +0.4 603,603 + Shewana3_0513 0.77 +0.6 603,611 - Shewana3_0513 0.79 -0.3 603,611 - Shewana3_0513 0.79 -0.1 603,611 - Shewana3_0513 0.79 +0.9 603,785 + Shewana3_0514 0.29 +0.1 603,803 + Shewana3_0514 0.38 -0.4 603,867 - Shewana3_0514 0.70 -1.4 604,053 - -0.7 604,273 + Shewana3_0515 0.40 -1.0 604,573 - +0.0 604,619 + -0.3 604,629 + +0.4 604,637 - +1.1 604,647 + -0.5 604,655 - +0.0 604,705 + -0.0 604,784 + -0.5 605,020 - Shewana3_0516 0.20 +0.3 605,097 + Shewana3_0516 0.25 +0.3 605,105 - Shewana3_0516 0.26 +0.1 605,105 - Shewana3_0516 0.26 -1.8 605,105 - Shewana3_0516 0.26 -0.3 605,105 - Shewana3_0516 0.26 -0.5 605,115 + Shewana3_0516 0.27 -0.7 605,159 - Shewana3_0516 0.30 -0.2 605,224 + Shewana3_0516 0.35 -0.2 605,234 - Shewana3_0516 0.35 +0.0 605,276 - Shewana3_0516 0.38 +0.3 605,295 + Shewana3_0516 0.40 -0.1 605,303 + Shewana3_0516 0.40 -0.1 605,305 + Shewana3_0516 0.40 +0.5 605,311 - Shewana3_0516 0.41 -0.9 605,326 - Shewana3_0516 0.42 +0.5
Or see this region's nucleotide sequence