Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0498 and Shewana3_0499 are separated by 213 nucleotides Shewana3_0499 and Shewana3_0500 are separated by 249 nucleotides
Shewana3_0498: Shewana3_0498 - copper ABC transporter, permease protein (RefSeq), at 580,794 to 581,681
_0498
Shewana3_0499: Shewana3_0499 - transcriptional regulator (RefSeq), at 581,895 to 583,178
_0499
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2 at 580.978 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 581.298 kb on + strand, within Shewana3_0498 at 581.368 kb on - strand, within Shewana3_0498 at 581.415 kb on + strand, within Shewana3_0498 at 581.416 kb on + strand, within Shewana3_0498 at 581.429 kb on - strand, within Shewana3_0498 at 581.441 kb on - strand, within Shewana3_0498 at 581.522 kb on - strand, within Shewana3_0498 at 581.553 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.561 kb on - strand, within Shewana3_0498 at 581.563 kb on + strand, within Shewana3_0498 at 581.874 kb on + strand at 581.906 kb on - strand at 582.011 kb on + strand at 582.013 kb on + strand at 582.072 kb on - strand, within Shewana3_0499 at 582.187 kb on + strand, within Shewana3_0499 at 582.195 kb on - strand, within Shewana3_0499 at 582.204 kb on + strand, within Shewana3_0499 at 582.323 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.436 kb on + strand, within Shewana3_0499 at 582.452 kb on - strand, within Shewana3_0499 at 582.520 kb on - strand, within Shewana3_0499 at 582.883 kb on + strand, within Shewana3_0499 at 583.142 kb on - strand at 583.193 kb on - strand at 583.222 kb on - strand at 583.265 kb on + strand at 583.265 kb on + strand at 583.460 kb on + strand at 583.622 kb on + strand at 583.629 kb on - strand at 583.751 kb on - strand, within Shewana3_0500 at 583.769 kb on + strand, within Shewana3_0500 at 583.832 kb on + strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.901 kb on - strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.943 kb on + strand, within Shewana3_0500 at 584.045 kb on + strand, within Shewana3_0500 at 584.064 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 580,978 + Shewana3_0498 0.21 -0.2 580,981 + Shewana3_0498 0.21 -0.3 580,981 + Shewana3_0498 0.21 -0.8 580,981 + Shewana3_0498 0.21 -0.2 580,981 + Shewana3_0498 0.21 -0.7 580,989 - Shewana3_0498 0.22 -1.9 580,989 - Shewana3_0498 0.22 +1.8 580,991 + Shewana3_0498 0.22 -0.1 580,991 + Shewana3_0498 0.22 -0.6 581,298 + Shewana3_0498 0.57 -0.7 581,368 - Shewana3_0498 0.65 -0.2 581,415 + Shewana3_0498 0.70 -0.1 581,416 + Shewana3_0498 0.70 +0.0 581,429 - Shewana3_0498 0.72 -0.1 581,441 - Shewana3_0498 0.73 +0.2 581,522 - Shewana3_0498 0.82 -0.2 581,553 + Shewana3_0498 0.85 +0.3 581,558 + Shewana3_0498 0.86 -0.9 581,558 + Shewana3_0498 0.86 +0.2 581,561 - Shewana3_0498 0.86 -0.8 581,563 + Shewana3_0498 0.87 -0.3 581,874 + +0.0 581,906 - -0.1 582,011 + +0.2 582,013 + +0.0 582,072 - Shewana3_0499 0.14 +0.0 582,187 + Shewana3_0499 0.23 -0.1 582,195 - Shewana3_0499 0.23 -0.2 582,204 + Shewana3_0499 0.24 -0.5 582,323 - Shewana3_0499 0.33 +2.2 582,420 - Shewana3_0499 0.41 -0.3 582,420 - Shewana3_0499 0.41 -0.4 582,436 + Shewana3_0499 0.42 +0.2 582,452 - Shewana3_0499 0.43 -0.2 582,520 - Shewana3_0499 0.49 +0.2 582,883 + Shewana3_0499 0.77 -0.1 583,142 - -0.4 583,193 - -0.5 583,222 - -0.8 583,265 + -0.2 583,265 + -0.7 583,460 + -0.5 583,622 + -0.3 583,629 - +0.1 583,751 - Shewana3_0500 0.15 -0.1 583,769 + Shewana3_0500 0.16 -0.3 583,832 + Shewana3_0500 0.19 +0.2 583,840 - Shewana3_0500 0.19 -0.7 583,840 - Shewana3_0500 0.19 -0.4 583,901 - Shewana3_0500 0.22 -0.7 583,936 + Shewana3_0500 0.24 +0.3 583,936 + Shewana3_0500 0.24 -0.3 583,943 + Shewana3_0500 0.24 -0.0 584,045 + Shewana3_0500 0.29 -0.0 584,064 + Shewana3_0500 0.30 -0.0 584,065 + Shewana3_0500 0.30 +0.2 584,065 + Shewana3_0500 0.30 -0.3
Or see this region's nucleotide sequence