Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0496 and Shewana3_0497 overlap by 4 nucleotides Shewana3_0497 and Shewana3_0498 overlap by 4 nucleotides
Shewana3_0496: Shewana3_0496 - periplasmic copper-binding (RefSeq), at 578,480 to 579,754
_0496
Shewana3_0497: Shewana3_0497 - ABC transporter related (RefSeq), at 579,751 to 580,797
_0497
Shewana3_0498: Shewana3_0498 - copper ABC transporter, permease protein (RefSeq), at 580,794 to 581,681
_0498
Position (kb) 579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 578.881 kb on + strand, within Shewana3_0496 at 578.889 kb on - strand, within Shewana3_0496 at 578.987 kb on + strand, within Shewana3_0496 at 579.168 kb on + strand, within Shewana3_0496 at 579.302 kb on - strand, within Shewana3_0496 at 579.304 kb on + strand, within Shewana3_0496 at 579.498 kb on + strand, within Shewana3_0496 at 579.563 kb on + strand, within Shewana3_0496 at 579.676 kb on - strand at 579.989 kb on - strand, within Shewana3_0497 at 579.994 kb on - strand, within Shewana3_0497 at 580.016 kb on + strand, within Shewana3_0497 at 580.147 kb on - strand, within Shewana3_0497 at 580.183 kb on - strand, within Shewana3_0497 at 580.232 kb on - strand, within Shewana3_0497 at 580.258 kb on + strand, within Shewana3_0497 at 580.268 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.481 kb on - strand, within Shewana3_0497 at 580.710 kb on + strand at 580.978 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 581.298 kb on + strand, within Shewana3_0498 at 581.368 kb on - strand, within Shewana3_0498 at 581.415 kb on + strand, within Shewana3_0498 at 581.416 kb on + strand, within Shewana3_0498 at 581.429 kb on - strand, within Shewana3_0498 at 581.441 kb on - strand, within Shewana3_0498 at 581.522 kb on - strand, within Shewana3_0498 at 581.553 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.561 kb on - strand, within Shewana3_0498 at 581.563 kb on + strand, within Shewana3_0498
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 578,881 + Shewana3_0496 0.31 -0.5 578,889 - Shewana3_0496 0.32 +0.1 578,987 + Shewana3_0496 0.40 -0.2 579,168 + Shewana3_0496 0.54 +0.0 579,302 - Shewana3_0496 0.64 -1.1 579,304 + Shewana3_0496 0.65 -1.3 579,498 + Shewana3_0496 0.80 -0.1 579,563 + Shewana3_0496 0.85 -0.1 579,676 - +1.5 579,989 - Shewana3_0497 0.23 -0.3 579,994 - Shewana3_0497 0.23 -0.1 580,016 + Shewana3_0497 0.25 +0.2 580,147 - Shewana3_0497 0.38 +0.9 580,183 - Shewana3_0497 0.41 -0.2 580,232 - Shewana3_0497 0.46 -0.7 580,258 + Shewana3_0497 0.48 -1.2 580,268 + Shewana3_0497 0.49 -0.2 580,473 + Shewana3_0497 0.69 -1.1 580,473 + Shewana3_0497 0.69 -0.5 580,481 - Shewana3_0497 0.70 -0.6 580,710 + +0.3 580,978 + Shewana3_0498 0.21 -0.2 580,981 + Shewana3_0498 0.21 -0.3 580,981 + Shewana3_0498 0.21 -0.8 580,981 + Shewana3_0498 0.21 -0.2 580,981 + Shewana3_0498 0.21 -0.7 580,989 - Shewana3_0498 0.22 -1.9 580,989 - Shewana3_0498 0.22 +1.8 580,991 + Shewana3_0498 0.22 -0.1 580,991 + Shewana3_0498 0.22 -0.6 581,298 + Shewana3_0498 0.57 -0.7 581,368 - Shewana3_0498 0.65 -0.2 581,415 + Shewana3_0498 0.70 -0.1 581,416 + Shewana3_0498 0.70 +0.0 581,429 - Shewana3_0498 0.72 -0.1 581,441 - Shewana3_0498 0.73 +0.2 581,522 - Shewana3_0498 0.82 -0.2 581,553 + Shewana3_0498 0.85 +0.3 581,558 + Shewana3_0498 0.86 -0.9 581,558 + Shewana3_0498 0.86 +0.2 581,561 - Shewana3_0498 0.86 -0.8 581,563 + Shewana3_0498 0.87 -0.3
Or see this region's nucleotide sequence