Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0485 and Shewana3_0486 are separated by 255 nucleotides Shewana3_0486 and Shewana3_0487 are separated by 49 nucleotides Shewana3_0487 and Shewana3_0488 overlap by 4 nucleotides
Shewana3_0485: Shewana3_0485 - hypothetical protein (RefSeq), at 567,453 to 568,031
_0485
Shewana3_0486: Shewana3_0486 - redoxin domain-containing protein (RefSeq), at 568,287 to 568,871
_0486
Shewana3_0487: Shewana3_0487 - cytochrome C biogenesis protein (RefSeq), at 568,921 to 569,340
_0487
Shewana3_0488: Shewana3_0488 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 569,337 to 571,376
_0488
Position (kb) 568
569
570 Strain fitness (log2 ratio) -1
0
1 at 568.423 kb on + strand, within Shewana3_0486 at 568.431 kb on - strand, within Shewana3_0486 at 568.480 kb on - strand, within Shewana3_0486 at 568.628 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.754 kb on + strand, within Shewana3_0486 at 568.803 kb on + strand, within Shewana3_0486 at 568.818 kb on + strand at 568.873 kb on + strand at 568.911 kb on + strand at 568.918 kb on + strand at 568.950 kb on - strand at 569.164 kb on + strand, within Shewana3_0487 at 569.169 kb on + strand, within Shewana3_0487 at 569.172 kb on - strand, within Shewana3_0487 at 569.177 kb on - strand, within Shewana3_0487 at 569.406 kb on - strand at 569.530 kb on - strand at 569.627 kb on + strand, within Shewana3_0488 at 569.634 kb on - strand, within Shewana3_0488 at 569.639 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.775 kb on + strand, within Shewana3_0488 at 569.893 kb on + strand, within Shewana3_0488 at 569.901 kb on - strand, within Shewana3_0488 at 569.936 kb on + strand, within Shewana3_0488 at 569.939 kb on + strand, within Shewana3_0488 at 569.944 kb on - strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.057 kb on + strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.065 kb on - strand, within Shewana3_0488 at 570.138 kb on + strand, within Shewana3_0488 at 570.276 kb on - strand, within Shewana3_0488 at 570.284 kb on - strand, within Shewana3_0488 at 570.301 kb on + strand, within Shewana3_0488
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 568,423 + Shewana3_0486 0.23 -0.4 568,431 - Shewana3_0486 0.25 -0.6 568,480 - Shewana3_0486 0.33 +0.2 568,628 + Shewana3_0486 0.58 +0.1 568,658 + Shewana3_0486 0.63 +0.1 568,658 + Shewana3_0486 0.63 -0.1 568,666 - Shewana3_0486 0.65 -0.8 568,666 - Shewana3_0486 0.65 -0.4 568,666 - Shewana3_0486 0.65 +0.2 568,754 + Shewana3_0486 0.80 -0.7 568,803 + Shewana3_0486 0.88 -0.4 568,818 + +0.3 568,873 + +0.3 568,911 + -0.1 568,918 + -1.0 568,950 - +0.4 569,164 + Shewana3_0487 0.58 +1.2 569,169 + Shewana3_0487 0.59 +0.8 569,172 - Shewana3_0487 0.60 -0.2 569,177 - Shewana3_0487 0.61 -0.0 569,406 - +0.5 569,530 - +0.1 569,627 + Shewana3_0488 0.14 -0.0 569,634 - Shewana3_0488 0.15 -0.1 569,639 - Shewana3_0488 0.15 +0.3 569,767 - Shewana3_0488 0.21 +0.2 569,767 - Shewana3_0488 0.21 +1.7 569,775 + Shewana3_0488 0.21 -0.1 569,893 + Shewana3_0488 0.27 -0.0 569,901 - Shewana3_0488 0.28 -0.7 569,936 + Shewana3_0488 0.29 +1.0 569,939 + Shewana3_0488 0.30 -0.7 569,944 - Shewana3_0488 0.30 -0.2 570,018 + Shewana3_0488 0.33 -0.0 570,018 + Shewana3_0488 0.33 -1.2 570,057 + Shewana3_0488 0.35 +0.4 570,059 - Shewana3_0488 0.35 -0.6 570,059 - Shewana3_0488 0.35 -0.1 570,059 - Shewana3_0488 0.35 +0.1 570,065 - Shewana3_0488 0.36 -0.3 570,138 + Shewana3_0488 0.39 -0.1 570,276 - Shewana3_0488 0.46 -0.2 570,284 - Shewana3_0488 0.46 +0.5 570,301 + Shewana3_0488 0.47 +0.2
Or see this region's nucleotide sequence