Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0393 and Shewana3_0394 overlap by 1 nucleotides Shewana3_0394 and Shewana3_0395 are separated by 148 nucleotides Shewana3_0395 and Shewana3_0396 are separated by 4 nucleotides Shewana3_0396 and Shewana3_0397 are separated by 98 nucleotides
Shewana3_0393: Shewana3_0393 - tyrosine recombinase XerC (RefSeq), at 453,548 to 454,447
_0393
Shewana3_0394: Shewana3_0394 - HAD family hydrolase (RefSeq), at 454,447 to 455,169
_0394
Shewana3_0395: Shewana3_0395 - HupE/UreJ protein (RefSeq), at 455,318 to 455,896
_0395
Shewana3_0396: Shewana3_0396 - putative transcriptional regulator (RefSeq), at 455,901 to 456,404
_0396
Shewana3_0397: Shewana3_0397 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 456,503 to 457,249
_0397
Position (kb) 455
456 Strain fitness (log2 ratio) -1
0
1 at 454.408 kb on - strand at 454.408 kb on - strand at 454.659 kb on - strand, within Shewana3_0394 at 454.701 kb on - strand, within Shewana3_0394 at 454.709 kb on + strand, within Shewana3_0394 at 454.755 kb on - strand, within Shewana3_0394 at 454.837 kb on - strand, within Shewana3_0394 at 454.937 kb on - strand, within Shewana3_0394 at 455.110 kb on + strand at 455.217 kb on + strand at 455.218 kb on + strand at 455.331 kb on + strand at 455.420 kb on - strand, within Shewana3_0395 at 455.434 kb on - strand, within Shewana3_0395 at 455.465 kb on + strand, within Shewana3_0395 at 455.603 kb on + strand, within Shewana3_0395 at 455.730 kb on + strand, within Shewana3_0395 at 455.738 kb on + strand, within Shewana3_0395 at 455.740 kb on - strand, within Shewana3_0395 at 455.899 kb on + strand at 455.906 kb on - strand at 456.045 kb on - strand, within Shewana3_0396 at 456.203 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.276 kb on + strand, within Shewana3_0396 at 456.283 kb on - strand, within Shewana3_0396 at 456.284 kb on - strand, within Shewana3_0396 at 456.334 kb on + strand, within Shewana3_0396 at 456.346 kb on + strand, within Shewana3_0396 at 456.586 kb on + strand, within Shewana3_0397 at 456.742 kb on - strand, within Shewana3_0397
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 454,408 - -1.5 454,408 - -1.2 454,659 - Shewana3_0394 0.29 -0.4 454,701 - Shewana3_0394 0.35 +0.7 454,709 + Shewana3_0394 0.36 -0.1 454,755 - Shewana3_0394 0.43 +0.4 454,837 - Shewana3_0394 0.54 -0.5 454,937 - Shewana3_0394 0.68 -0.5 455,110 + +1.5 455,217 + -0.3 455,218 + +0.6 455,331 + -0.4 455,420 - Shewana3_0395 0.18 -0.8 455,434 - Shewana3_0395 0.20 +0.9 455,465 + Shewana3_0395 0.25 +1.1 455,603 + Shewana3_0395 0.49 -0.6 455,730 + Shewana3_0395 0.71 +0.1 455,738 + Shewana3_0395 0.73 -0.2 455,740 - Shewana3_0395 0.73 +1.6 455,899 + -0.1 455,906 - -0.7 456,045 - Shewana3_0396 0.29 -0.3 456,203 + Shewana3_0396 0.60 -0.1 456,276 + Shewana3_0396 0.74 +0.0 456,276 + Shewana3_0396 0.74 -0.3 456,276 + Shewana3_0396 0.74 -0.1 456,283 - Shewana3_0396 0.76 +0.4 456,284 - Shewana3_0396 0.76 -0.2 456,334 + Shewana3_0396 0.86 -0.1 456,346 + Shewana3_0396 0.88 +0.8 456,586 + Shewana3_0397 0.11 +0.9 456,742 - Shewana3_0397 0.32 -0.2
Or see this region's nucleotide sequence