Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0340 and Shewana3_0341 are separated by 29 nucleotides Shewana3_0341 and Shewana3_0342 are separated by 6 nucleotides Shewana3_0342 and Shewana3_0343 overlap by 1 nucleotides Shewana3_0343 and Shewana3_0344 are separated by 9 nucleotides Shewana3_0344 and Shewana3_0345 overlap by 14 nucleotides
Shewana3_0340: Shewana3_0340 - transposase (RefSeq), at 375,622 to 376,017
_0340
Shewana3_0341: Shewana3_0341 - integrase catalytic subunit (RefSeq), at 376,047 to 376,850
_0341
Shewana3_0342: Shewana3_0342 - hypothetical protein (RefSeq), at 376,857 to 377,240
_0342
Shewana3_0343: Shewana3_0343 - acyl carrier protein (RefSeq), at 377,240 to 377,488
_0343
Shewana3_0344: Shewana3_0344 - acyl carrier protein, putative (RefSeq), at 377,498 to 377,752
_0344
Shewana3_0345: Shewana3_0345 - phospholipid/glycerol acyltransferase (RefSeq), at 377,739 to 378,587
_0345
Position (kb) 376
377
378 Strain fitness (log2 ratio) -1
0
1 at 376.875 kb on + strand at 376.943 kb on + strand, within Shewana3_0342 at 377.058 kb on - strand, within Shewana3_0342 at 377.059 kb on - strand, within Shewana3_0342 at 377.113 kb on - strand, within Shewana3_0342 at 377.144 kb on - strand, within Shewana3_0342 at 377.149 kb on - strand, within Shewana3_0342 at 377.243 kb on + strand at 377.265 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.372 kb on + strand, within Shewana3_0343 at 377.380 kb on - strand, within Shewana3_0343 at 377.635 kb on + strand, within Shewana3_0344 at 377.683 kb on + strand, within Shewana3_0344 at 378.078 kb on + strand, within Shewana3_0345 at 378.086 kb on - strand, within Shewana3_0345 at 378.113 kb on - strand, within Shewana3_0345 at 378.193 kb on - strand, within Shewana3_0345
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 376,875 + -0.4 376,943 + Shewana3_0342 0.22 -0.3 377,058 - Shewana3_0342 0.52 -0.5 377,059 - Shewana3_0342 0.53 +1.5 377,113 - Shewana3_0342 0.67 -0.4 377,144 - Shewana3_0342 0.75 +0.2 377,149 - Shewana3_0342 0.76 -0.3 377,243 + -1.2 377,265 + Shewana3_0343 0.10 -0.6 377,362 + Shewana3_0343 0.49 -0.8 377,362 + Shewana3_0343 0.49 -0.5 377,372 + Shewana3_0343 0.53 +1.0 377,380 - Shewana3_0343 0.56 +0.1 377,635 + Shewana3_0344 0.54 -1.0 377,683 + Shewana3_0344 0.73 -0.7 378,078 + Shewana3_0345 0.40 -0.2 378,086 - Shewana3_0345 0.41 -0.5 378,113 - Shewana3_0345 0.44 -0.8 378,193 - Shewana3_0345 0.53 +0.4
Or see this region's nucleotide sequence