Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0269 and Shewana3_0270 are separated by 117 nucleotides Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides Shewana3_0271 and Shewana3_0272 are separated by 81 nucleotides
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471
_0272
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269 at 303.535 kb on + strand, within Shewana3_0269 at 303.554 kb on - strand, within Shewana3_0269 at 303.565 kb on - strand, within Shewana3_0269 at 303.668 kb on - strand, within Shewana3_0269 at 303.695 kb on + strand, within Shewana3_0269 at 303.722 kb on - strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.773 kb on - strand, within Shewana3_0269 at 303.929 kb on + strand, within Shewana3_0269 at 303.938 kb on - strand, within Shewana3_0269 at 303.969 kb on + strand, within Shewana3_0269 at 304.149 kb on + strand at 304.149 kb on + strand at 304.157 kb on - strand at 304.272 kb on - strand at 304.352 kb on + strand at 304.536 kb on + strand, within Shewana3_0270 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand at 305.437 kb on - strand, within Shewana3_0271 at 305.554 kb on - strand at 305.608 kb on + strand at 305.688 kb on - strand at 305.758 kb on + strand, within Shewana3_0272 at 305.758 kb on + strand, within Shewana3_0272 at 305.837 kb on + strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.929 kb on + strand, within Shewana3_0272 at 305.974 kb on - strand, within Shewana3_0272
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 303,385 + Shewana3_0269 0.39 -0.1 303,385 + Shewana3_0269 0.39 -0.3 303,393 - Shewana3_0269 0.40 -0.9 303,505 - Shewana3_0269 0.48 -1.3 303,535 + Shewana3_0269 0.50 -0.2 303,554 - Shewana3_0269 0.51 -0.5 303,565 - Shewana3_0269 0.52 -0.0 303,668 - Shewana3_0269 0.59 -0.2 303,695 + Shewana3_0269 0.61 -0.5 303,722 - Shewana3_0269 0.63 -0.9 303,765 + Shewana3_0269 0.66 -1.0 303,765 + Shewana3_0269 0.66 -0.5 303,773 - Shewana3_0269 0.66 +1.0 303,929 + Shewana3_0269 0.77 -0.7 303,938 - Shewana3_0269 0.77 -0.4 303,969 + Shewana3_0269 0.79 +0.4 304,149 + +0.4 304,149 + -2.0 304,157 - +2.3 304,272 - +0.3 304,352 + -0.2 304,536 + Shewana3_0270 0.22 -0.6 304,603 - Shewana3_0270 0.31 -0.0 304,795 - Shewana3_0270 0.59 -0.8 304,804 + Shewana3_0270 0.60 -0.4 304,880 - Shewana3_0270 0.71 -2.3 304,880 - Shewana3_0270 0.71 -0.6 305,104 - -0.3 305,437 - Shewana3_0271 0.90 -0.2 305,554 - -0.2 305,608 + +0.2 305,688 - -0.3 305,758 + Shewana3_0272 0.11 +0.0 305,758 + Shewana3_0272 0.11 -0.4 305,837 + Shewana3_0272 0.15 -0.5 305,845 - Shewana3_0272 0.15 +0.6 305,845 - Shewana3_0272 0.15 -1.5 305,845 - Shewana3_0272 0.15 -0.1 305,929 + Shewana3_0272 0.20 -0.0 305,974 - Shewana3_0272 0.22 +0.0
Or see this region's nucleotide sequence