Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0176

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0175 and Shewana3_0176 overlap by 1 nucleotidesShewana3_0176 and Shewana3_0177 are separated by 96 nucleotides Shewana3_0175: Shewana3_0175 - tRNA 2-selenouridine synthase (RefSeq), at 208,523 to 209,620 _0175 Shewana3_0176: Shewana3_0176 - selenophosphate synthase (RefSeq), at 209,620 to 210,678 _0176 Shewana3_0177: Shewana3_0177 - Delta-9 acyl-phospholipid desaturase (RefSeq), at 210,775 to 211,902 _0177 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1at 208.639 kb on + strand, within Shewana3_0175at 208.641 kb on - strand, within Shewana3_0175at 208.657 kb on + strand, within Shewana3_0175at 208.768 kb on + strand, within Shewana3_0175at 208.768 kb on + strand, within Shewana3_0175at 208.774 kb on - strand, within Shewana3_0175at 208.776 kb on - strand, within Shewana3_0175at 208.781 kb on + strand, within Shewana3_0175at 208.809 kb on - strand, within Shewana3_0175at 209.025 kb on - strand, within Shewana3_0175at 209.056 kb on + strand, within Shewana3_0175at 209.089 kb on - strand, within Shewana3_0175at 209.132 kb on - strand, within Shewana3_0175at 209.257 kb on - strand, within Shewana3_0175at 209.330 kb on + strand, within Shewana3_0175at 209.341 kb on - strand, within Shewana3_0175at 209.672 kb on - strandat 209.838 kb on - strand, within Shewana3_0176at 209.870 kb on - strand, within Shewana3_0176at 209.926 kb on - strand, within Shewana3_0176at 209.933 kb on - strand, within Shewana3_0176at 209.965 kb on + strand, within Shewana3_0176at 209.973 kb on - strand, within Shewana3_0176at 209.999 kb on + strand, within Shewana3_0176at 210.035 kb on + strand, within Shewana3_0176at 210.239 kb on - strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.277 kb on + strand, within Shewana3_0176at 210.340 kb on + strand, within Shewana3_0176at 210.638 kb on + strandat 210.689 kb on - strandat 210.777 kb on + strandat 210.789 kb on + strandat 210.826 kb on - strandat 210.988 kb on - strand, within Shewana3_0177at 211.072 kb on - strand, within Shewana3_0177at 211.102 kb on - strand, within Shewana3_0177at 211.108 kb on - strand, within Shewana3_0177at 211.147 kb on - strand, within Shewana3_0177at 211.196 kb on + strand, within Shewana3_0177at 211.247 kb on + strand, within Shewana3_0177at 211.247 kb on + strand, within Shewana3_0177at 211.255 kb on - strand, within Shewana3_0177at 211.270 kb on - strand, within Shewana3_0177at 211.270 kb on - strand, within Shewana3_0177at 211.386 kb on + strand, within Shewana3_0177at 211.429 kb on - strand, within Shewana3_0177at 211.467 kb on + strand, within Shewana3_0177at 211.518 kb on + strand, within Shewana3_0177

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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208,639 + Shewana3_0175 0.11 -0.3
208,641 - Shewana3_0175 0.11 -0.5
208,657 + Shewana3_0175 0.12 +0.6
208,768 + Shewana3_0175 0.22 +0.0
208,768 + Shewana3_0175 0.22 -0.7
208,774 - Shewana3_0175 0.23 -0.4
208,776 - Shewana3_0175 0.23 -0.4
208,781 + Shewana3_0175 0.23 -1.3
208,809 - Shewana3_0175 0.26 -1.1
209,025 - Shewana3_0175 0.46 -2.6
209,056 + Shewana3_0175 0.49 +0.4
209,089 - Shewana3_0175 0.52 -0.2
209,132 - Shewana3_0175 0.55 -0.3
209,257 - Shewana3_0175 0.67 -1.0
209,330 + Shewana3_0175 0.73 -0.3
209,341 - Shewana3_0175 0.74 -0.9
209,672 - -0.5
209,838 - Shewana3_0176 0.21 +1.0
209,870 - Shewana3_0176 0.24 -0.2
209,926 - Shewana3_0176 0.29 -0.8
209,933 - Shewana3_0176 0.30 -0.9
209,965 + Shewana3_0176 0.33 -0.8
209,973 - Shewana3_0176 0.33 -0.3
209,999 + Shewana3_0176 0.36 -1.5
210,035 + Shewana3_0176 0.39 -1.1
210,239 - Shewana3_0176 0.58 -1.1
210,277 + Shewana3_0176 0.62 -0.7
210,277 + Shewana3_0176 0.62 -1.8
210,277 + Shewana3_0176 0.62 -0.2
210,340 + Shewana3_0176 0.68 +0.1
210,638 + -0.6
210,689 - -0.1
210,777 + -0.2
210,789 + +0.5
210,826 - +0.5
210,988 - Shewana3_0177 0.19 +0.9
211,072 - Shewana3_0177 0.26 +0.5
211,102 - Shewana3_0177 0.29 +0.0
211,108 - Shewana3_0177 0.30 +0.2
211,147 - Shewana3_0177 0.33 +0.3
211,196 + Shewana3_0177 0.37 -0.3
211,247 + Shewana3_0177 0.42 -0.6
211,247 + Shewana3_0177 0.42 +0.9
211,255 - Shewana3_0177 0.43 +0.4
211,270 - Shewana3_0177 0.44 +0.4
211,270 - Shewana3_0177 0.44 +0.0
211,386 + Shewana3_0177 0.54 -1.0
211,429 - Shewana3_0177 0.58 +1.1
211,467 + Shewana3_0177 0.61 +0.9
211,518 + Shewana3_0177 0.66 +0.1

Or see this region's nucleotide sequence