Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0092 and Shewana3_0093 are separated by 29 nucleotides Shewana3_0093 and Shewana3_0094 are separated by 43 nucleotides Shewana3_0094 and Shewana3_0095 are separated by 90 nucleotides
Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164
_0092
Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589
_0093
Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280
_0094
Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278
_0095
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1 at 103.212 kb on + strand at 103.270 kb on + strand at 103.328 kb on + strand at 103.851 kb on - strand, within Shewana3_0092 at 104.385 kb on - strand, within Shewana3_0093 at 104.783 kb on - strand, within Shewana3_0094 at 104.792 kb on + strand, within Shewana3_0094 at 104.843 kb on + strand, within Shewana3_0094 at 105.130 kb on - strand, within Shewana3_0094 at 105.369 kb on + strand at 105.411 kb on + strand at 105.569 kb on + strand, within Shewana3_0095 at 105.570 kb on + strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 103,212 + -0.2 103,270 + -0.7 103,328 + -0.4 103,851 - Shewana3_0092 0.61 -0.6 104,385 - Shewana3_0093 0.48 +0.8 104,783 - Shewana3_0094 0.23 -0.3 104,792 + Shewana3_0094 0.25 -0.3 104,843 + Shewana3_0094 0.32 -0.2 105,130 - Shewana3_0094 0.77 -0.1 105,369 + -0.4 105,411 + +0.1 105,569 + Shewana3_0095 0.10 +0.1 105,570 + Shewana3_0095 0.10 -0.4 105,570 - Shewana3_0095 0.10 +0.0 105,570 - Shewana3_0095 0.10 -0.1
Or see this region's nucleotide sequence