Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0034 and def are separated by 15 nucleotides def and Shewana3_0036 are separated by 125 nucleotides Shewana3_0036 and Shewana3_0037 are separated by 83 nucleotides
Shewana3_0034: Shewana3_0034 - methionyl-tRNA formyltransferase (RefSeq), at 41,372 to 42,328
_0034
Shewana3_0035: def - peptide deformylase (RefSeq), at 42,344 to 42,850
def
Shewana3_0036: Shewana3_0036 - peptidoglycan-binding LysM (RefSeq), at 42,976 to 44,100
_0036
Shewana3_0037: Shewana3_0037 - DNA protecting protein DprA (RefSeq), at 44,184 to 45,200
_0037
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.520 kb on - strand, within def at 42.527 kb on - strand, within def at 42.637 kb on - strand, within def at 42.774 kb on + strand, within def at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.292 kb on + strand, within Shewana3_0036 at 43.292 kb on + strand, within Shewana3_0036 at 43.300 kb on - strand, within Shewana3_0036 at 43.300 kb on - strand, within Shewana3_0036 at 43.302 kb on - strand, within Shewana3_0036 at 43.359 kb on - strand, within Shewana3_0036 at 43.366 kb on + strand, within Shewana3_0036 at 43.439 kb on - strand, within Shewana3_0036 at 43.485 kb on - strand, within Shewana3_0036 at 43.517 kb on + strand, within Shewana3_0036 at 43.543 kb on + strand, within Shewana3_0036 at 43.543 kb on + strand, within Shewana3_0036 at 43.681 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.722 kb on + strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.809 kb on + strand, within Shewana3_0036 at 43.817 kb on - strand, within Shewana3_0036 at 43.884 kb on + strand, within Shewana3_0036 at 43.884 kb on + strand, within Shewana3_0036 at 43.892 kb on - strand, within Shewana3_0036 at 43.892 kb on - strand, within Shewana3_0036 at 43.909 kb on + strand, within Shewana3_0036 at 43.945 kb on - strand, within Shewana3_0036 at 43.981 kb on + strand, within Shewana3_0036 at 44.047 kb on - strand at 44.078 kb on + strand at 44.093 kb on - strand at 44.183 kb on + strand at 44.187 kb on + strand at 44.258 kb on - strand at 44.261 kb on - strand at 44.319 kb on - strand, within Shewana3_0037 at 44.348 kb on + strand, within Shewana3_0037 at 44.356 kb on - strand, within Shewana3_0037 at 44.410 kb on + strand, within Shewana3_0037 at 44.452 kb on + strand, within Shewana3_0037 at 44.496 kb on + strand, within Shewana3_0037 at 44.504 kb on - strand, within Shewana3_0037 at 44.573 kb on - strand, within Shewana3_0037 at 44.583 kb on - strand, within Shewana3_0037 at 44.614 kb on - strand, within Shewana3_0037 at 44.777 kb on + strand, within Shewana3_0037 at 44.812 kb on + strand, within Shewana3_0037 at 44.919 kb on + strand, within Shewana3_0037 at 44.937 kb on - strand, within Shewana3_0037 at 45.006 kb on - strand, within Shewana3_0037
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 42,520 - def Shewana3_0035 0.35 -1.0 42,527 - def Shewana3_0035 0.36 -0.6 42,637 - def Shewana3_0035 0.58 -0.0 42,774 + def Shewana3_0035 0.85 +0.2 43,247 - Shewana3_0036 0.24 -0.4 43,247 - Shewana3_0036 0.24 -0.0 43,247 - Shewana3_0036 0.24 +0.6 43,247 - Shewana3_0036 0.24 -0.4 43,247 - Shewana3_0036 0.24 +0.1 43,292 + Shewana3_0036 0.28 -0.2 43,292 + Shewana3_0036 0.28 +1.7 43,300 - Shewana3_0036 0.29 +0.0 43,300 - Shewana3_0036 0.29 -0.1 43,302 - Shewana3_0036 0.29 +0.6 43,359 - Shewana3_0036 0.34 -0.5 43,366 + Shewana3_0036 0.35 -0.0 43,439 - Shewana3_0036 0.41 -0.2 43,485 - Shewana3_0036 0.45 -0.3 43,517 + Shewana3_0036 0.48 +0.2 43,543 + Shewana3_0036 0.50 +0.0 43,543 + Shewana3_0036 0.50 -0.4 43,681 + Shewana3_0036 0.63 -0.4 43,719 + Shewana3_0036 0.66 +0.1 43,719 + Shewana3_0036 0.66 +0.1 43,719 + Shewana3_0036 0.66 -0.1 43,719 + Shewana3_0036 0.66 +0.0 43,719 + Shewana3_0036 0.66 +0.1 43,722 + Shewana3_0036 0.66 -0.3 43,727 - Shewana3_0036 0.67 -0.4 43,727 - Shewana3_0036 0.67 -0.4 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 -0.1 43,727 - Shewana3_0036 0.67 -0.0 43,727 - Shewana3_0036 0.67 +0.2 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 -0.1 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 +0.9 43,809 + Shewana3_0036 0.74 -0.3 43,817 - Shewana3_0036 0.75 -0.2 43,884 + Shewana3_0036 0.81 -0.3 43,884 + Shewana3_0036 0.81 -1.6 43,892 - Shewana3_0036 0.81 -0.5 43,892 - Shewana3_0036 0.81 -0.1 43,909 + Shewana3_0036 0.83 -0.2 43,945 - Shewana3_0036 0.86 -0.3 43,981 + Shewana3_0036 0.89 -0.1 44,047 - +0.4 44,078 + -0.5 44,093 - +0.9 44,183 + -0.3 44,187 + -0.5 44,258 - -0.4 44,261 - -0.3 44,319 - Shewana3_0037 0.13 -0.1 44,348 + Shewana3_0037 0.16 +0.1 44,356 - Shewana3_0037 0.17 +0.0 44,410 + Shewana3_0037 0.22 -0.2 44,452 + Shewana3_0037 0.26 +0.0 44,496 + Shewana3_0037 0.31 -0.3 44,504 - Shewana3_0037 0.31 -0.3 44,573 - Shewana3_0037 0.38 -0.5 44,583 - Shewana3_0037 0.39 -0.3 44,614 - Shewana3_0037 0.42 -0.7 44,777 + Shewana3_0037 0.58 -0.2 44,812 + Shewana3_0037 0.62 +0.8 44,919 + Shewana3_0037 0.72 -0.1 44,937 - Shewana3_0037 0.74 -0.1 45,006 - Shewana3_0037 0.81 -0.5
Or see this region's nucleotide sequence