Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0033 and Shewana3_0034 overlap by 1 nucleotides Shewana3_0034 and def are separated by 15 nucleotides def and Shewana3_0036 are separated by 125 nucleotides
Shewana3_0033: Shewana3_0033 - sun protein (RefSeq), at 40,083 to 41,372
_0033
Shewana3_0034: Shewana3_0034 - methionyl-tRNA formyltransferase (RefSeq), at 41,372 to 42,328
_0034
Shewana3_0035: def - peptide deformylase (RefSeq), at 42,344 to 42,850
def
Shewana3_0036: Shewana3_0036 - peptidoglycan-binding LysM (RefSeq), at 42,976 to 44,100
_0036
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1 at 41.404 kb on + strand at 42.520 kb on - strand, within def at 42.527 kb on - strand, within def at 42.637 kb on - strand, within def at 42.774 kb on + strand, within def at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.247 kb on - strand, within Shewana3_0036 at 43.292 kb on + strand, within Shewana3_0036 at 43.292 kb on + strand, within Shewana3_0036 at 43.300 kb on - strand, within Shewana3_0036 at 43.300 kb on - strand, within Shewana3_0036 at 43.302 kb on - strand, within Shewana3_0036 at 43.359 kb on - strand, within Shewana3_0036 at 43.366 kb on + strand, within Shewana3_0036 at 43.439 kb on - strand, within Shewana3_0036 at 43.485 kb on - strand, within Shewana3_0036 at 43.517 kb on + strand, within Shewana3_0036 at 43.543 kb on + strand, within Shewana3_0036 at 43.543 kb on + strand, within Shewana3_0036 at 43.681 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.719 kb on + strand, within Shewana3_0036 at 43.722 kb on + strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.727 kb on - strand, within Shewana3_0036 at 43.809 kb on + strand, within Shewana3_0036 at 43.817 kb on - strand, within Shewana3_0036
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 41,404 + -0.2 42,520 - def Shewana3_0035 0.35 -1.0 42,527 - def Shewana3_0035 0.36 -0.6 42,637 - def Shewana3_0035 0.58 -0.0 42,774 + def Shewana3_0035 0.85 +0.2 43,247 - Shewana3_0036 0.24 -0.4 43,247 - Shewana3_0036 0.24 -0.0 43,247 - Shewana3_0036 0.24 +0.6 43,247 - Shewana3_0036 0.24 -0.4 43,247 - Shewana3_0036 0.24 +0.1 43,292 + Shewana3_0036 0.28 -0.2 43,292 + Shewana3_0036 0.28 +1.7 43,300 - Shewana3_0036 0.29 +0.0 43,300 - Shewana3_0036 0.29 -0.1 43,302 - Shewana3_0036 0.29 +0.6 43,359 - Shewana3_0036 0.34 -0.5 43,366 + Shewana3_0036 0.35 -0.0 43,439 - Shewana3_0036 0.41 -0.2 43,485 - Shewana3_0036 0.45 -0.3 43,517 + Shewana3_0036 0.48 +0.2 43,543 + Shewana3_0036 0.50 +0.0 43,543 + Shewana3_0036 0.50 -0.4 43,681 + Shewana3_0036 0.63 -0.4 43,719 + Shewana3_0036 0.66 +0.1 43,719 + Shewana3_0036 0.66 +0.1 43,719 + Shewana3_0036 0.66 -0.1 43,719 + Shewana3_0036 0.66 +0.0 43,719 + Shewana3_0036 0.66 +0.1 43,722 + Shewana3_0036 0.66 -0.3 43,727 - Shewana3_0036 0.67 -0.4 43,727 - Shewana3_0036 0.67 -0.4 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 -0.1 43,727 - Shewana3_0036 0.67 -0.0 43,727 - Shewana3_0036 0.67 +0.2 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 -0.1 43,727 - Shewana3_0036 0.67 -0.3 43,727 - Shewana3_0036 0.67 +0.9 43,809 + Shewana3_0036 0.74 -0.3 43,817 - Shewana3_0036 0.75 -0.2
Or see this region's nucleotide sequence