Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4297 and Shewana3_4298 are separated by 28 nucleotides Shewana3_4298 and Shewana3_4299 are separated by 113 nucleotides Shewana3_4299 and Shewana3_4300 are separated by 10 nucleotides
Shewana3_4297: Shewana3_4297 - copper/silver efflux system outer membrane protein CusC (RefSeq), at 180,422 to 181,807
_4297
Shewana3_4298: Shewana3_4298 - periplasmic copper-binding protein (RefSeq), at 181,836 to 182,189
_4298
Shewana3_4299: Shewana3_4299 - copper/silver efflux system membrane fusion protein CusB (RefSeq), at 182,303 to 183,595
_4299
Shewana3_4300: Shewana3_4300 - CzcA family heavy metal efflux protein (RefSeq), at 183,606 to 186,752
_4300
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2 at 181.352 kb on - strand, within Shewana3_4297 at 181.352 kb on - strand, within Shewana3_4297 at 181.468 kb on - strand, within Shewana3_4297 at 181.545 kb on + strand, within Shewana3_4297 at 181.563 kb on + strand, within Shewana3_4297 at 181.575 kb on + strand, within Shewana3_4297 at 181.689 kb on - strand at 181.746 kb on + strand at 181.754 kb on - strand at 181.855 kb on - strand at 182.144 kb on + strand, within Shewana3_4298 at 182.178 kb on + strand at 182.196 kb on + strand at 182.420 kb on + strand at 182.513 kb on + strand, within Shewana3_4299 at 182.565 kb on - strand, within Shewana3_4299 at 182.580 kb on + strand, within Shewana3_4299 at 182.800 kb on + strand, within Shewana3_4299 at 182.877 kb on + strand, within Shewana3_4299 at 183.181 kb on - strand, within Shewana3_4299 at 183.341 kb on - strand, within Shewana3_4299 at 183.763 kb on + strand at 183.864 kb on - strand at 183.904 kb on + strand at 183.909 kb on + strand at 183.909 kb on + strand at 183.914 kb on + strand at 184.356 kb on + strand, within Shewana3_4300 at 184.371 kb on + strand, within Shewana3_4300 at 184.448 kb on + strand, within Shewana3_4300 at 184.527 kb on - strand, within Shewana3_4300 at 184.550 kb on + strand, within Shewana3_4300
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 181,352 - Shewana3_4297 0.67 -0.3 181,352 - Shewana3_4297 0.67 -0.4 181,468 - Shewana3_4297 0.75 -1.0 181,545 + Shewana3_4297 0.81 +0.3 181,563 + Shewana3_4297 0.82 -0.6 181,575 + Shewana3_4297 0.83 -0.6 181,689 - -0.3 181,746 + +0.1 181,754 - -0.8 181,855 - -0.1 182,144 + Shewana3_4298 0.87 -0.1 182,178 + +0.5 182,196 + -0.6 182,420 + +0.6 182,513 + Shewana3_4299 0.16 -0.1 182,565 - Shewana3_4299 0.20 +0.2 182,580 + Shewana3_4299 0.21 +1.8 182,800 + Shewana3_4299 0.38 -0.2 182,877 + Shewana3_4299 0.44 +0.1 183,181 - Shewana3_4299 0.68 -0.5 183,341 - Shewana3_4299 0.80 -1.3 183,763 + -0.3 183,864 - +2.2 183,904 + +0.3 183,909 + -0.2 183,909 + -0.4 183,914 + -0.1 184,356 + Shewana3_4300 0.24 -0.5 184,371 + Shewana3_4300 0.24 -0.1 184,448 + Shewana3_4300 0.27 -0.3 184,527 - Shewana3_4300 0.29 -0.0 184,550 + Shewana3_4300 0.30 +0.1
Or see this region's nucleotide sequence