Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4293 and Shewana3_4294 are separated by 465 nucleotides Shewana3_4294 and Shewana3_4295 are separated by 169 nucleotides
Shewana3_4293: Shewana3_4293 - outer membrane porin (RefSeq), at 175,971 to 177,167
_4293
Shewana3_4294: Shewana3_4294 - hypothetical protein (RefSeq), at 177,633 to 177,914
_4294
Shewana3_4295: Shewana3_4295 - sensor kinase CusS (RefSeq), at 178,084 to 179,559
_4295
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.681 kb on + strand, within Shewana3_4293 at 176.759 kb on + strand, within Shewana3_4293 at 176.874 kb on - strand at 176.875 kb on + strand, within Shewana3_4293 at 176.876 kb on + strand, within Shewana3_4293 at 176.876 kb on + strand, within Shewana3_4293 at 176.888 kb on + strand, within Shewana3_4293 at 176.896 kb on - strand, within Shewana3_4293 at 176.910 kb on - strand, within Shewana3_4293 at 176.943 kb on + strand, within Shewana3_4293 at 176.951 kb on - strand, within Shewana3_4293 at 176.951 kb on - strand, within Shewana3_4293 at 176.999 kb on - strand, within Shewana3_4293 at 177.001 kb on + strand, within Shewana3_4293 at 177.153 kb on + strand at 177.161 kb on + strand at 177.234 kb on + strand at 177.234 kb on + strand at 177.254 kb on - strand at 177.349 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.373 kb on + strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.381 kb on - strand at 177.391 kb on - strand at 177.391 kb on - strand at 177.391 kb on - strand at 177.563 kb on - strand at 177.563 kb on - strand at 177.656 kb on + strand at 177.664 kb on - strand, within Shewana3_4294 at 177.817 kb on + strand, within Shewana3_4294 at 177.928 kb on - strand at 178.039 kb on + strand at 178.180 kb on - strand at 178.350 kb on + strand, within Shewana3_4295 at 178.364 kb on + strand, within Shewana3_4295 at 178.453 kb on - strand, within Shewana3_4295 at 178.502 kb on - strand, within Shewana3_4295 at 178.575 kb on + strand, within Shewana3_4295 at 178.638 kb on - strand, within Shewana3_4295 at 178.649 kb on + strand, within Shewana3_4295
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 176,681 + Shewana3_4293 0.59 +0.2 176,759 + Shewana3_4293 0.66 -0.1 176,874 - +1.9 176,875 + Shewana3_4293 0.76 +0.0 176,876 + Shewana3_4293 0.76 +0.4 176,876 + Shewana3_4293 0.76 -0.2 176,888 + Shewana3_4293 0.77 -0.8 176,896 - Shewana3_4293 0.77 +0.3 176,910 - Shewana3_4293 0.78 -1.3 176,943 + Shewana3_4293 0.81 -0.3 176,951 - Shewana3_4293 0.82 -0.1 176,951 - Shewana3_4293 0.82 +1.9 176,999 - Shewana3_4293 0.86 -0.4 177,001 + Shewana3_4293 0.86 -0.0 177,153 + -0.3 177,161 + -0.2 177,234 + -0.9 177,234 + +0.1 177,254 - +1.2 177,349 + +0.3 177,373 + +0.0 177,373 + +0.0 177,373 + -0.5 177,373 + -0.4 177,381 - +0.9 177,381 - +0.7 177,381 - -0.4 177,381 - -0.1 177,391 - +2.9 177,391 - -1.4 177,391 - -2.7 177,563 - -0.4 177,563 - -1.9 177,656 + -0.5 177,664 - Shewana3_4294 0.11 -1.3 177,817 + Shewana3_4294 0.65 -0.0 177,928 - +1.0 178,039 + +0.1 178,180 - -0.7 178,350 + Shewana3_4295 0.18 +0.6 178,364 + Shewana3_4295 0.19 -0.4 178,453 - Shewana3_4295 0.25 -0.1 178,502 - Shewana3_4295 0.28 -0.2 178,575 + Shewana3_4295 0.33 +0.8 178,638 - Shewana3_4295 0.38 -0.2 178,649 + Shewana3_4295 0.38 -1.6
Or see this region's nucleotide sequence