Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4292

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4290 and Shewana3_4291 are separated by 75 nucleotidesShewana3_4291 and Shewana3_4292 are separated by 188 nucleotidesShewana3_4292 and Shewana3_4293 are separated by 456 nucleotides Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261 _4290 Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780 _4291 Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514 _4292 Shewana3_4293: Shewana3_4293 - outer membrane porin (RefSeq), at 175,971 to 177,167 _4293 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 173.976 kb on + strand, within Shewana3_4290at 173.995 kb on + strand, within Shewana3_4290at 174.022 kb on + strand, within Shewana3_4290at 174.030 kb on - strand, within Shewana3_4290at 174.064 kb on - strand, within Shewana3_4290at 174.092 kb on + strand, within Shewana3_4290at 174.141 kb on + strand, within Shewana3_4290at 174.208 kb on - strandat 174.331 kb on + strandat 174.344 kb on - strandat 174.346 kb on + strandat 174.346 kb on + strandat 174.346 kb on + strandat 174.354 kb on - strandat 174.429 kb on + strand, within Shewana3_4291at 174.485 kb on - strand, within Shewana3_4291at 174.540 kb on - strand, within Shewana3_4291at 174.577 kb on + strand, within Shewana3_4291at 174.595 kb on + strand, within Shewana3_4291at 174.595 kb on + strand, within Shewana3_4291at 174.603 kb on - strand, within Shewana3_4291at 174.603 kb on - strand, within Shewana3_4291at 174.665 kb on + strand, within Shewana3_4291at 174.681 kb on + strand, within Shewana3_4291at 174.703 kb on - strand, within Shewana3_4291at 174.719 kb on + strand, within Shewana3_4291at 174.719 kb on + strand, within Shewana3_4291at 174.727 kb on - strand, within Shewana3_4291at 174.781 kb on - strandat 174.858 kb on + strandat 174.876 kb on - strandat 174.931 kb on + strandat 174.985 kb on - strandat 175.005 kb on - strandat 175.025 kb on - strand, within Shewana3_4292at 175.025 kb on - strand, within Shewana3_4292at 175.027 kb on + strand, within Shewana3_4292at 175.115 kb on + strand, within Shewana3_4292at 175.161 kb on - strand, within Shewana3_4292at 175.168 kb on + strandat 175.212 kb on + strand, within Shewana3_4292at 175.230 kb on - strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.260 kb on - strand, within Shewana3_4292at 175.306 kb on + strand, within Shewana3_4292at 175.388 kb on + strand, within Shewana3_4292at 175.396 kb on - strand, within Shewana3_4292at 175.411 kb on + strand, within Shewana3_4292at 175.421 kb on - strand, within Shewana3_4292at 175.466 kb on + strandat 175.515 kb on + strandat 175.523 kb on - strandat 175.528 kb on - strandat 175.608 kb on - strandat 175.637 kb on - strandat 175.683 kb on - strandat 175.685 kb on + strandat 175.691 kb on - strandat 175.697 kb on - strandat 175.710 kb on + strandat 175.718 kb on - strandat 175.993 kb on + strandat 176.001 kb on - strandat 176.003 kb on + strandat 176.011 kb on - strandat 176.036 kb on + strandat 176.059 kb on - strandat 176.072 kb on - strandat 176.177 kb on + strand, within Shewana3_4293at 176.190 kb on + strand, within Shewana3_4293at 176.196 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.198 kb on - strand, within Shewana3_4293at 176.228 kb on + strand, within Shewana3_4293at 176.262 kb on - strand, within Shewana3_4293at 176.267 kb on - strand, within Shewana3_4293at 176.268 kb on - strand, within Shewana3_4293at 176.309 kb on + strand, within Shewana3_4293

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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173,976 + Shewana3_4290 0.68 -0.7
173,995 + Shewana3_4290 0.70 +1.0
174,022 + Shewana3_4290 0.73 -1.2
174,030 - Shewana3_4290 0.74 +0.3
174,064 - Shewana3_4290 0.78 +0.3
174,092 + Shewana3_4290 0.81 +0.1
174,141 + Shewana3_4290 0.87 -0.5
174,208 - +0.9
174,331 + -0.2
174,344 - +0.9
174,346 + +1.4
174,346 + -0.4
174,346 + +0.2
174,354 - -0.9
174,429 + Shewana3_4291 0.21 -0.4
174,485 - Shewana3_4291 0.33 -1.6
174,540 - Shewana3_4291 0.46 -0.4
174,577 + Shewana3_4291 0.54 -0.1
174,595 + Shewana3_4291 0.58 -0.4
174,595 + Shewana3_4291 0.58 +0.7
174,603 - Shewana3_4291 0.60 -0.1
174,603 - Shewana3_4291 0.60 +1.9
174,665 + Shewana3_4291 0.74 -0.1
174,681 + Shewana3_4291 0.77 -0.5
174,703 - Shewana3_4291 0.82 -0.9
174,719 + Shewana3_4291 0.86 -1.3
174,719 + Shewana3_4291 0.86 +0.0
174,727 - Shewana3_4291 0.88 +0.2
174,781 - +0.3
174,858 + -1.0
174,876 - -1.9
174,931 + +0.3
174,985 - -2.2
175,005 - +0.0
175,025 - Shewana3_4292 0.10 -0.1
175,025 - Shewana3_4292 0.10 -0.0
175,027 + Shewana3_4292 0.11 +1.9
175,115 + Shewana3_4292 0.27 +0.5
175,161 - Shewana3_4292 0.35 -1.2
175,168 + +0.9
175,212 + Shewana3_4292 0.45 +0.9
175,230 - Shewana3_4292 0.48 -0.7
175,252 + Shewana3_4292 0.52 +0.9
175,252 + Shewana3_4292 0.52 -0.7
175,252 + Shewana3_4292 0.52 +0.1
175,252 + Shewana3_4292 0.52 -1.4
175,260 - Shewana3_4292 0.53 -0.4
175,306 + Shewana3_4292 0.62 +0.9
175,388 + Shewana3_4292 0.77 +0.3
175,396 - Shewana3_4292 0.78 -1.1
175,411 + Shewana3_4292 0.81 +0.3
175,421 - Shewana3_4292 0.83 -0.9
175,466 + +1.3
175,515 + -0.1
175,523 - +0.5
175,528 - -0.4
175,608 - -0.3
175,637 - +0.1
175,683 - -0.1
175,685 + -0.5
175,691 - +1.0
175,697 - -0.6
175,710 + -0.8
175,718 - +1.1
175,993 + -0.8
176,001 - +1.9
176,003 + -1.1
176,011 - -1.3
176,036 + +0.2
176,059 - -1.1
176,072 - -0.4
176,177 + Shewana3_4293 0.17 -0.3
176,190 + Shewana3_4293 0.18 +0.3
176,196 + Shewana3_4293 0.19 -0.8
176,197 + Shewana3_4293 0.19 +0.9
176,197 + Shewana3_4293 0.19 -1.1
176,197 + Shewana3_4293 0.19 -0.4
176,197 + Shewana3_4293 0.19 -0.6
176,197 + Shewana3_4293 0.19 -0.4
176,197 + Shewana3_4293 0.19 +0.2
176,198 - Shewana3_4293 0.19 +0.3
176,228 + Shewana3_4293 0.21 -0.3
176,262 - Shewana3_4293 0.24 +1.9
176,267 - Shewana3_4293 0.25 -0.0
176,268 - Shewana3_4293 0.25 +0.4
176,309 + Shewana3_4293 0.28 +0.3

Or see this region's nucleotide sequence