Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4251

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4250 and Shewana3_4251 are separated by 144 nucleotidesShewana3_4251 and Shewana3_4252 are separated by 1 nucleotides Shewana3_4250: Shewana3_4250 - KAP P-loop domain-containing protein (RefSeq), at 125,137 to 126,921 _4250 Shewana3_4251: Shewana3_4251 - hypothetical protein (RefSeq), at 127,066 to 127,518 _4251 Shewana3_4252: Shewana3_4252 - phage integrase family protein (RefSeq), at 127,520 to 129,604 _4252 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1at 126.254 kb on - strand, within Shewana3_4250at 126.332 kb on - strand, within Shewana3_4250at 126.392 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.580 kb on - strand, within Shewana3_4250at 126.674 kb on - strand, within Shewana3_4250at 126.705 kb on - strand, within Shewana3_4250at 126.840 kb on - strandat 127.067 kb on + strandat 127.153 kb on - strand, within Shewana3_4251at 127.164 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.181 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.325 kb on - strand, within Shewana3_4251at 127.355 kb on + strand, within Shewana3_4251at 127.377 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.381 kb on + strand, within Shewana3_4251at 127.385 kb on - strand, within Shewana3_4251at 127.616 kb on + strandat 127.616 kb on + strandat 127.624 kb on - strandat 127.624 kb on - strandat 127.641 kb on - strandat 127.813 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252at 127.941 kb on - strand, within Shewana3_4252at 127.945 kb on + strand, within Shewana3_4252at 127.951 kb on - strand, within Shewana3_4252at 128.040 kb on - strand, within Shewana3_4252at 128.260 kb on - strand, within Shewana3_4252

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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126,254 - Shewana3_4250 0.63 -1.5
126,332 - Shewana3_4250 0.67 -1.0
126,392 + Shewana3_4250 0.70 -1.2
126,572 + Shewana3_4250 0.80 -0.3
126,572 + Shewana3_4250 0.80 -0.7
126,572 + Shewana3_4250 0.80 -0.3
126,580 - Shewana3_4250 0.81 -0.9
126,674 - Shewana3_4250 0.86 +0.4
126,705 - Shewana3_4250 0.88 -0.6
126,840 - +0.0
127,067 + -0.5
127,153 - Shewana3_4251 0.19 -0.1
127,164 + Shewana3_4251 0.22 -1.3
127,169 + Shewana3_4251 0.23 -0.0
127,169 + Shewana3_4251 0.23 -1.8
127,169 + Shewana3_4251 0.23 +1.1
127,169 + Shewana3_4251 0.23 -0.7
127,169 + Shewana3_4251 0.23 -0.7
127,169 + Shewana3_4251 0.23 -0.0
127,177 - Shewana3_4251 0.25 +1.2
127,177 - Shewana3_4251 0.25 -1.3
127,177 - Shewana3_4251 0.25 -1.0
127,177 - Shewana3_4251 0.25 -0.1
127,181 + Shewana3_4251 0.25 +0.5
127,317 + Shewana3_4251 0.55 +0.5
127,317 + Shewana3_4251 0.55 -0.3
127,325 - Shewana3_4251 0.57 -0.9
127,355 + Shewana3_4251 0.64 +0.2
127,377 + Shewana3_4251 0.69 -0.7
127,378 + Shewana3_4251 0.69 +0.0
127,378 + Shewana3_4251 0.69 -0.0
127,381 + Shewana3_4251 0.70 +0.9
127,385 - Shewana3_4251 0.70 +0.1
127,616 + -1.1
127,616 + +0.6
127,624 - -0.2
127,624 - -0.1
127,641 - -0.3
127,813 - Shewana3_4252 0.14 -0.1
127,853 - Shewana3_4252 0.16 +0.1
127,853 - Shewana3_4252 0.16 +0.1
127,941 - Shewana3_4252 0.20 +0.2
127,945 + Shewana3_4252 0.20 -0.4
127,951 - Shewana3_4252 0.21 -0.2
128,040 - Shewana3_4252 0.25 -0.5
128,260 - Shewana3_4252 0.35 +0.1

Or see this region's nucleotide sequence