Experiment: Vanillin 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4173 and Shewana3_4174 are separated by 205 nucleotides Shewana3_4174 and Shewana3_4175 are separated by 240 nucleotides Shewana3_4175 and Shewana3_4176 are separated by 414 nucleotides
Shewana3_4173: Shewana3_4173 - putative prophage repressor (RefSeq), at 39,612 to 40,346
_4173
Shewana3_4174: Shewana3_4174 - hypothetical protein (RefSeq), at 40,552 to 40,911
_4174
Shewana3_4175: Shewana3_4175 - hypothetical protein (RefSeq), at 41,152 to 42,258
_4175
Shewana3_4176: Shewana3_4176 - hypothetical protein (RefSeq), at 42,673 to 43,521
_4176
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 40.203 kb on - strand, within Shewana3_4173 at 40.244 kb on + strand, within Shewana3_4173 at 40.304 kb on - strand at 40.459 kb on + strand at 40.467 kb on - strand at 40.477 kb on - strand at 40.526 kb on + strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.544 kb on - strand at 40.573 kb on - strand at 40.791 kb on - strand, within Shewana3_4174 at 40.840 kb on - strand, within Shewana3_4174 at 40.874 kb on - strand, within Shewana3_4174 at 40.881 kb on + strand at 41.088 kb on - strand at 41.271 kb on - strand, within Shewana3_4175 at 41.863 kb on + strand, within Shewana3_4175 at 41.917 kb on + strand, within Shewana3_4175 at 42.066 kb on + strand, within Shewana3_4175 at 42.122 kb on + strand, within Shewana3_4175 at 42.125 kb on - strand, within Shewana3_4175 at 42.383 kb on + strand at 42.391 kb on - strand at 42.391 kb on - strand at 42.435 kb on + strand at 42.443 kb on - strand at 42.443 kb on - strand at 42.443 kb on - strand at 42.629 kb on + strand at 42.630 kb on + strand at 42.630 kb on + strand at 42.650 kb on - strand at 42.765 kb on - strand, within Shewana3_4176 at 43.253 kb on + strand, within Shewana3_4176 at 43.253 kb on + strand, within Shewana3_4176
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1 mM remove 40,203 - Shewana3_4173 0.80 -0.4 40,244 + Shewana3_4173 0.86 -0.1 40,304 - -0.3 40,459 + +0.0 40,467 - +0.3 40,477 - +0.0 40,526 + -0.6 40,544 - -0.3 40,544 - +0.0 40,544 - -0.1 40,544 - +0.8 40,573 - -0.2 40,791 - Shewana3_4174 0.66 +1.2 40,840 - Shewana3_4174 0.80 -0.2 40,874 - Shewana3_4174 0.89 -1.3 40,881 + +0.4 41,088 - +0.1 41,271 - Shewana3_4175 0.11 +3.9 41,863 + Shewana3_4175 0.64 -0.0 41,917 + Shewana3_4175 0.69 +0.3 42,066 + Shewana3_4175 0.83 +2.2 42,122 + Shewana3_4175 0.88 +0.3 42,125 - Shewana3_4175 0.88 +0.3 42,383 + -0.2 42,391 - +1.3 42,391 - +0.7 42,435 + -0.7 42,443 - +1.6 42,443 - +0.3 42,443 - +0.4 42,629 + -1.3 42,630 + +2.9 42,630 + +0.7 42,650 - +0.6 42,765 - Shewana3_4176 0.11 -0.3 43,253 + Shewana3_4176 0.68 -0.6 43,253 + Shewana3_4176 0.68 -0.2
Or see this region's nucleotide sequence