Strain Fitness in Shewanella loihica PV-4 around Shew_3180

Experiment: Spectinomycin 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 10 mg/ml
3,784,573	+				+0.1
3,784,610	-				+0.2
3,784,650	-				+1.8
3,784,652	+				+0.1
3,784,660	+				-0.6
3,784,835	-		Shew_3179	0.12	-0.9
3,784,900	-		Shew_3179	0.20	-0.3
3,785,057	+		Shew_3179	0.40	-0.1
3,785,173	-		Shew_3179	0.55	-0.2
3,785,262	+		Shew_3179	0.67	-0.2
3,785,586	+				+0.4
3,785,589	-				+0.5
3,785,858	+		Shew_3180	0.46	-0.3
3,786,127	+		Shew_3180	0.83	-0.3
3,786,137	-		Shew_3180	0.85	+0.2
3,786,160	+		Shew_3180	0.88	+0.0
3,786,207	-				-0.1
3,786,214	+				-0.4
3,786,232	-				+0.4
3,786,345	+				-0.0
3,786,611	-				-0.3
3,786,957	-				+0.4
3,787,042	+		Shew_3181	0.15	+0.0
3,787,073	-		Shew_3181	0.16	+0.5
3,787,123	+		Shew_3181	0.19	+0.2